Structure information

M1 receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

6OIJ

SPECIES

Homo sapiens

RESOLUTION

3.300

PREFERRED CHAIN

R

PUBLICATION DATE

May 8, 2019

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

Ligand Interaction Browser

Download list in excel
Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
iperoxo Y106 3.33x33 TM3 hydrophobic
iperoxo Q110 3.37x37 TM3 polar (hydrogen bond)
iperoxo Q110 3.37x37 TM3 polar (hydrogen bond)
iperoxo A196 5.46x461 TM5 polar (hydrogen bond with backbone)
iperoxo F197 5.47x47 TM5 polar (hydrogen bond with backbone)
iperoxo W378 6.48x48 TM6 hydrophobic
iperoxo Y381 6.51x51 TM6 hydrophobic

Ligands

iperoxo

3D interaction viewer Download PDB file

NGL is a WebGL based 3D viewer powered by MMTF.


Residue Diagrams

L N G T V T A L S L L G T T I G I F A V 1 L S L A C A D L I I G F T S M N L Y T T Y 2 L L L N M V S A N S A V Y D L A L W L D 3 A A L M I G L A W L V S F V L W A P A I 4 Y L T C M V T V P L Y F A A M A T G F T I 5 S A I L L A F I L T W T P Y N I M V L V 6 M P N I T S N V Y C L W Y G L E W L T 7
Download: PNG | SVG
ICL1 T E L K ICL1ECL1 H W A L ECL1ICL2 P L S Y R A K R ICL2ECL2 E R T V L A G Q C Y I Q F L S ECL2ICL3 Q G S E T P G K G G G S S S S S E R S Q P G A E G S P E T P P G R C C R C C R A P R L L Q A Y S W K E E E E E D E G S M E S L T S S E G E E P G S E V V I K M P M V D P E A Q A P T K Q P P R S S P N T V K R P T K K G R D R A G K G Q K P R G K E Q L A K R K ICL3ECL3 K D C V ECL3N-term M N T S A P P A V S P N I T V L A P G K N-termC-term R W D K R R W R K I P K R P G S V H R T P S R Q C C-term G P W Q V A F I G I T T G L L S L A T V T G N L L V L I S F K V N T V N N Y F L L S L A C A D L I I G T F S M N L Y T T Y L L M G G T L A C D L W L A L D Y V A S N A S V M N L L L I S F D R Y F S V T R T P R R A A L M I G L A W L V S F V L W A P A I L F W Q Y L V G Q P I I T F G T A M A A F Y L P V T V M C T L Y W R I Y R E T E N R A R E L A A L T F S L V K E K K A A R T L S A I L L A F I L T W T P Y N I M V L V S T F C P E T L W E L G Y W L C Y V N S T I N P M C Y A L C N K A F R L F R D T L L L C
Download: PNG | SVG

Residue Table


GPCRdb(A)
GPCRdb(A)
M1 receptor
TM3
3x33 3.33x33 Y106
3x37 3.37x37 N110
TM5
5x461 5.46x461 A196
5x47 5.47x47 F197
TM6
6x48 6.48x48 W378
6x51 6.51x51 Y381