Structure information

β2-adrenoceptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

6PS3

SPECIES

Homo sapiens

RESOLUTION

2.500

PREFERRED CHAIN

A

REFERENCE

PUBLICATION DATE

Nov. 13, 2019

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

Ligand Interaction Browser

Download list in excel
Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
CHEMBL3799125 H93 2.64x63 TM2 aromatic (face-to-edge)
CHEMBL3799125 I94 2.65x64 TM2 hydrophobic
CHEMBL3799125 W109 3.28x28 TM3 aromatic (edge-to-face)
CHEMBL3799125 D113 3.32x32 TM3 polar (charge-assisted hydrogen bond)
CHEMBL3799125 V114 3.33x33 TM3 Van der Waals
CHEMBL3799125 V114 3.33x33 TM3 hydrophobic
CHEMBL3799125 V117 3.36x36 TM3 hydrophobic
CHEMBL3799125 V117 3.36x36 TM3 Van der Waals
CHEMBL3799125 T118 3.37x37 TM3 Van der Waals
CHEMBL3799125 F193 45.52x52 ECL2 hydrophobic
CHEMBL3799125 F193 45.52x52 ECL2 Van der Waals
CHEMBL3799125 Y199 5.38x39 TM5 Van der Waals
CHEMBL3799125 Y199 5.38x39 TM5 hydrophobic
CHEMBL3799125 A200 5.39x40 TM5 hydrophobic
CHEMBL3799125 A200 5.39x40 TM5 Van der Waals
CHEMBL3799125 S203 5.42x43 TM5 polar (hydrogen bond)
CHEMBL3799125 S207 5.46x461 TM5 Van der Waals
CHEMBL3799125 W286 6.48x48 TM6 Van der Waals
CHEMBL3799125 F289 6.51x51 TM6 Van der Waals
CHEMBL3799125 F289 6.51x51 TM6 hydrophobic
CHEMBL3799125 F290 6.52x52 TM6 aromatic (edge-to-face)
CHEMBL3799125 F290 6.52x52 TM6 Van der Waals
CHEMBL3799125 N293 6.55x55 TM6 Van der Waals
CHEMBL3799125 Y308 7.35x34 TM7 Van der Waals
CHEMBL3799125 I309 7.36x35 TM7 hydrophobic
CHEMBL3799125 N312 7.39x38 TM7 polar (hydrogen bond)
CHEMBL3799125 N312 7.39x38 TM7 polar (hydrogen bond)
CHEMBL3799125 Y316 7.43x42 TM7 hydrophobic
CHEMBL3799125 Y316 7.43x42 TM7 Van der Waals

Ligands

CHEMBL3799125

3D interaction viewer Download PDB file

NGL is a WebGL based 3D viewer powered by MMTF.


Residue Diagrams

V N G F V I A L V I L S M V I G M G V V 1 T S L A C A D L V M G A L V V P F G A A H 2 V C L T E I S A T V C L V D I S T W F E 3 A R V I I L M V W I V S G L T S F L P I 4 Y V F V M I V L P V Y F S V I S S A I A Y 5 G I I M G T F T L C W L P F F I V N I V 6 L P N F G S N V Y G I W N L L I Y V E 7
Download: PNG | SVG
ICL1 E R L Q ICL1ECL1 M W T F ECL1ICL2 P F K Y Q S L L ICL2ECL2 W Y R A T H Q E A I N C Y A N E T C C D F F T ECL2ICL3 G R F H V Q N L S Q V E Q D G R T G H G L R R S ICL3ECL3 D N L I ECL3N-term M G Q P G N G S A F L L A P N G S H A P D H D V T N-termC-term L R R S S L K A Y G N G Y S S N G N T G E Q S G Y H V E Q E K E N K L L C E D L P G T E D F V G H Q G T V P S D N I D S Q G R N C S T N D S L L C-term Q E R D E V W V V G M G I V M S L I V L A I V F G N V L V I T A I A K F T V T N Y F I T S L A C A D L V M G L A V V P F G A A H I L M K G N F W C E F W T S I D V L C V T A S I E T L C V I A V D R Y F A I T S T K N K A R V I I L M V W I V S G L T S F L P I Q M H N Q A Y A I A S S I V S F Y V P L V I M V F V Y S R V F Q E A K R Q L Q K I D K S E S K F C L K E H K A L K T L G I I M G T F T L C W L P F F I V N I V H V I Q R K E V Y I L L N W I G Y V N S G F N P L I Y C R S P D F Q E F R I A L L C
Download: PNG | SVG

Residue Table


GPCRdb(A)
GPCRdb(A)
β2-adrenoceptor
TM2
2x63 2.64x63 H93
2x64 2.65x64 I94
TM3
3x28 3.28x28 W109
3x32 3.32x32 D113
3x33 3.33x33 V114
3x36 3.36x36 V117
3x37 3.37x37 T118
ECL2
45x52 45.52x52 F193
TM5
5x39 5.38x39 Y199
5x40 5.39x40 A200
5x43 5.42x43 S203
5x461 5.46x461 S207
TM6
6x48 6.48x48 W286
6x51 6.51x51 F289
6x52 6.52x52 F290
6x55 6.55x55 N293
TM7
7x34 7.35x34 Y308
7x35 7.36x35 I309
7x38 7.39x38 N312
7x42 7.43x42 Y316