Structure information

succinate receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

6RNK

SPECIES

Rattus norvegicus

RESOLUTION

1.940

PREFERRED CHAIN

A

PUBLICATION DATE

Aug. 14, 2019

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
NF-56-EJ40 E18 1.31x31 TM1 polar (charge-charge)
NF-56-EJ40 Y26 1.39x39 TM1 polar (charge-assisted hydrogen bond)
NF-56-EJ40 L75 2.60x60 TM2 hydrophobic
NF-56-EJ40 Y79 2.64x64 TM2 polar (charge-assisted hydrogen bond)
NF-56-EJ40 Y79 2.64x64 TM2 polar (charge-assisted hydrogen bond)
NF-56-EJ40 W84 23.50x50 ECL1 hydrophobic
NF-56-EJ40 L98 3.32x32 TM3 hydrophobic
NF-56-EJ40 R276 7.39x38 TM7 polar (charge-charge)
NF-56-EJ40 F280 7.43x42 TM7 hydrophobic

Ligands

NF-56-EJ40

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Residue Diagrams

F N G L M G V I F E I G Y F A S L Y Y K 1 F N L S I S D L A F L C T L P M L I R S 2 F T L F L I S T Y L N A H L V Y R N S I 3 A I L I S L A V W V L V T L E V L P M 4 Y F F C M V S L P I L F G L L T L C L S Y 5 V L A V V I F S V L F T P Y H I M R N V 6 I P N V A S N L F A L P R T L I Y L C 7
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ICL1 K N W ICL1ECL1 N W T Y ECL1ICL2 P F R E H I L Q ICL2ECL2 P I E K G D S C V D Y A S S G ECL2ICL3 S Q Q ICL3ECL3 D S W P Q G ECL3N-term M A Q N L S N-termC-term T S F R L C-term C E N W L A L E N I L K K Y Y L S A F Y G I E F I V G M L G N F T V V F G Y L F C M N S S N V Y L F N L S I S D L A F L C T L P M L I R S Y A T G G D V L C I S N R Y V L H A N L Y T S I L F L T F I S I D R Y L L M K F K K E F A I L I S L A V W V L V T L E V L P M L T F I T S T N P K Y S L I Y S L C L T L L G F L I P L S V M C F F Y Y K M V V F L K K R Q A T V L S L N K P L R L V V L A V V I F S V L F T P Y H I M R N V R I A S R L C S Q K A I K C L Y I L T R P L A F L N S A V N P I F Y F L V G D H L F S Y F K F R D M K L R Q S L
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Residue Table


GPCRdb(A)
GPCRdb(A)
succinate receptor
TM1
1x31 1.31x31 K18
1x39 1.39x39 Y26
TM2
2x60 2.60x60 L75
2x64 2.64x64 Y79
ECL1
23x50 23.50x50 W84
TM3
3x32 3.32x32 L98
TM7
7x38 7.39x38 R276
7x42 7.43x42 F280