Structure information

GABAB1

PROTEIN CLASS

Class C (Glutamate)

PDB CODE

6W2Y

SPECIES

Homo sapiens

RESOLUTION

3.200

PREFERRED CHAIN

B

PUBLICATION DATE

July 1, 2020

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
CGP55845 W65 N-term hydrophobic
CGP55845 S130 N-term polar (hydrogen bond)
CGP55845 S130 N-term polar (hydrogen bond with backbone)
CGP55845 G151 N-term polar (hydrogen bond with backbone)
CGP55845 S153 N-term polar (hydrogen bond with backbone)
CGP55845 S153 N-term polar (hydrogen bond)
CGP55845 S153 N-term polar (hydrogen bond)
CGP55845 H170 N-term polar (charge-assisted hydrogen bond)
CGP55845 W278 N-term aromatic (face-to-face)
CGP55845 E349 N-term polar (charge-charge)
1-Stearoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine L530 2.56x56 TM2 polar (hydrogen bond with backbone)
1-Stearoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine R549 3.32x32 TM3 polar (charge-assisted hydrogen bond)
1-Stearoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine L550 3.33x33 TM3 hydrophobic
1-Stearoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine L553 3.36x36 TM3 hydrophobic
1-Stearoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine F557 3.40x40 TM3 hydrophobic
1-Stearoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine Y657 5.44x44 TM5 hydrophobic
1-Stearoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine C699 6.50x50 TM6 hydrophobic
1-Stearoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine A703 6.54x54 TM6 hydrophobic
1-Stearoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine I724 7.36x37 TM7 hydrophobic

Ligands

CGP55845

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1-Stearoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine

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Residue Diagrams

V A L V I G L S S L V S V S I F L K 1 N L T A V G C S L A L A A V F P L G L 2 T F M S G Y G L S F G L G L L W L R A Q 3 L Y A T V G L L V G M D V L T L A I W Q 4 A L F I G L L L L L G K Y G Y F I G L W 5 G M A I Y N V A V L C L I T A P V T M I 6 V L T I Y S S F V I A L S A F A F A A 7
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ICL1 V S H R Y I Q N S ICL1ECL1 D G Y H I G R N ECL1ICL2 T K K E E K K E W R K T L ICL2ECL2 P L H R T I E T F A K E E P K E D I D V S I L P Q L E H C S S R ECL2ICL3 S V S T E K I N ICL3ECL3 S S Q Q D ECL3N-term M L L L L L L A P L F L R P P G A G G A Q T P N A T S E G C Q I I H P P W E G G I R Y R G L T R D Q V K A I N F L P V D Y E I E Y V C R G E R E V V G P K V R K C L A N G S W T D M D T P S R C V R I C S K S Y L T L E N G K V F L T G G D L P A L D G A R V D F R C D P D F H L V G S S R S I C S Q G Q W S T P K P H C Q V N R T P H S E R R A V Y I G A L F P M S G G W P G G Q A C Q P A V E M A L E D V N S R R D I L P D Y E L K L I H H D S K C D P G Q A T K Y L Y E L L Y N D P I K I I L M P G C S S V S T L V A E A A R M W N L I V L S Y G S S S P A L S N R Q R F P T F F R T H P S A T L H N P T R V K L F E K W G W K K I A T I Q Q T T E V F T S T L D D L E E R V K E A G I E I T F R Q S F F S D P A V P V K N L K R Q D A R I I V G L F Y E T E A R K V F C E V Y K E R L F G K K Y V W F L I G W Y A D N W F K I Y D P S I N C T V D E M T E A V E G H I T T E I V M L N P A N T R S I S N M T S Q E F V E K L T K R L K R H P E E T G G F Q E A P L A Y D A I W A L A L A L N K T S G G G G R S G V R L E D F N Y N N Q T I T D Q I Y R A M N S S S F E G V S G H V V F D A S G S R M A W T L I E Q L Q G G S Y K K I G Y Y D S T K D D L S W S K T D K W I G G S P P A D Q T L V I K T F R F L S Q N-termC-term T G S S T N N N E E E K S R L L E K E N R E L E K I I A E K E E R V S E L R H Q L Q S R Q Q L R S R R H P P T P P E P S G G L P R G P P E P P D R L S C D G S R V H L L Y K C-term K L F I S V S V L S S L G I V L A V V C L S F N I Y N Q P N L N N L T A V G C S L A L A A V F P L G L Q F P F V C Q A R L W L L G L G F S L G Y G S M F T K I W W V H T V F E P W K L Y A T V G L L V G M D V L T L A I W Q I V D K M N T W L G I F Y G Y K G L L L L L G I F L A Y E T K D H R A V G M A I Y N V A V L C L I T A P V T M I L A A F A F A S L A I V F S S Y I T L V V L F V P K M R R L I T R G E W Q D T Q S E A M K
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Residue Table


GPCRdb(A)
GPCRdb(C)
GABAB1
TM2
2x60 2.56x56 L647
TM3
3x28 3.32x32 R666
3x29 3.33x33 L667
3x32 3.36x36 L670
3x36 3.40x40 F674
TM5
5x44 5.44x44 Y774
TM6
6x48 6.50x50 C816
6x52 6.54x54 A820
TM7
7x42 7.36x37 I841