Structure information

β1-adrenoceptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

7BTS

SPECIES

Homo sapiens

RESOLUTION

3.130

PREFERRED CHAIN

A

REFERENCE

10.1038/S41422-020-00424-2

PUBLICATION DATE

Dec. 2, 2020

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
(-)-adrenaline D1138 3.32x32 TM3 polar (charge-assisted hydrogen bond)
(-)-adrenaline V1139 3.33x33 TM3 hydrophobic
(-)-adrenaline V1139 3.33x33 TM3 Van der Waals
(-)-adrenaline V1142 3.36x36 TM3 Van der Waals
(-)-adrenaline V1142 3.36x36 TM3 hydrophobic
(-)-adrenaline F1218 45.52x52 ECL2 Van der Waals
(-)-adrenaline F1218 45.52x52 ECL2 aromatic (face-to-edge)
(-)-adrenaline S1228 5.42x43 TM5 polar (hydrogen bond with backbone)
(-)-adrenaline S1228 5.42x43 TM5 polar (hydrogen bond)
(-)-adrenaline S1228 5.42x43 TM5 Van der Waals
(-)-adrenaline S1232 5.46x461 TM5 polar (hydrogen bond)
(-)-adrenaline S1232 5.46x461 TM5 Van der Waals
(-)-adrenaline F1340 6.51x51 TM6 Van der Waals
(-)-adrenaline F1340 6.51x51 TM6 aromatic (edge-to-face)
(-)-adrenaline F1341 6.52x52 TM6 Van der Waals
(-)-adrenaline F1341 6.52x52 TM6 aromatic (edge-to-face)
(-)-adrenaline N1344 6.55x55 TM6 polar (hydrogen bond)
(-)-adrenaline N1344 6.55x55 TM6 Van der Waals
(-)-adrenaline N1363 7.39x38 TM7 polar (hydrogen bond)
(-)-adrenaline N1363 7.39x38 TM7 polar (hydrogen bond)
(-)-adrenaline Y1367 7.43x42 TM7 Van der Waals

Ligands

(-)-adrenaline

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Residue Diagrams

V N G A V I L L V I L A M L L G M G A T 1 M S L A S A D L V M G L L V V P F G A T I 2 V C L T E I S A T V C L V D V S T W L E 3 A R G L V C T V W A I S A L V S F L P I 4 Y V F A M I C L P V Y F S V V S S A I A Y 5 G I I M G V F T L C W L P F F L A N V V 6 I P N F A S N A Y G L W N F F V F L R 7
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ICL1 P R L Q ICL1ECL1 R W E Y ECL1ICL2 P F R Y Q S L L ICL2ECL2 W W R A E S D E A R R C Y N D P K C C D F V T ECL2ICL3 C E R R F L G G P A R P P S P S P S P V P A P A P P P G P P R P A A A A A T A P L A N G R A G K R R P S ICL3ECL3 R E L V ECL3N-term M G A G V L V L G A S E P G N L S S A A P L P D G A A T A A R L L V P A S P P A S L L P P A S E S N-termC-term C A R R A A R R R H A T H G D R P R A S G C L A R P G P P P S P G A A S D D D D D D V V G A T P P A R L L E P W A G C N G G A A A D S D S S L D E P C R P G F A S E S K V C-term P E P L S Q Q W T A G M G L L M A L I V L L I V A G N V L V I V A I A K T T L T N L F I M S L A S A D L V M G L L V V P F G A T I V V W G G S F F C E L W T S V D V L C V T A S I E T L C V I A L D R Y L A I T S T R A R A R G L V C T V W A I S A L V S F L P I L M H N R A Y A I A S S V V S F Y V P L C I M A F V Y L R V F R E A Q K Q V K K I D S R L V A L R E Q K A L K T L G I I M G V F T L C W L P F F L A N V V K A F H P D R L F V F F N W L G Y A N S A F N P I I Y C R S P D F Q R F R K A L L C
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Residue Table


GPCRdb(A)
GPCRdb(A)
β1-adrenoceptor
TM3
3x32 3.32x32 D138
3x33 3.33x33 V139
3x36 3.36x36 V142
ECL2
45x52 45.52x52 F218
TM5
5x43 5.42x43 S228
5x461 5.46x461 S232
TM6
6x51 6.51x51 F340
6x52 6.52x52 F341
6x55 6.55x55 N344
TM7
7x38 7.39x38 N363
7x42 7.43x42 Y367