PDB
Resolution
3.4 Å
Released
July 29, 2020
Receptor
Class
A
Species
Homo sapiens
Ligand
SI
Function
Agonist (partial)

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file
Download list in excel
Ligand Amino Acid Generic Number Segment Interaction Type
SI W100 2.60x60 TM2 hydrophobic
SI Y103 2.63x63 TM2 polar (hydrogen bond)
SI Y103 2.63x63 TM2 Van der Waals
SI Y104 2.64x64 TM2 hydrophobic
SI Y104 2.64x64 TM2 Van der Waals
SI Y108 ECL1 Van der Waals
SI Y108 ECL1 hydrophobic
SI L124 3.32x32 TM3 hydrophobic
SI L124 3.32x32 TM3 Van der Waals
SI R182 4.64x65 TM4 polar (charge-assisted hydrogen bond)
SI I187 ECL2 Van der Waals
SI I187 ECL2 hydrophobic
SI E188 ECL2 polar (charge-assisted hydrogen bond)
SI Y189 ECL2 hydrophobic
SI Y189 ECL2 Van der Waals
SI C195 45.50x50 ECL2 Van der Waals
SI C195 45.50x50 ECL2 polar (hydrogen bond with backbone)
SI I196 45.51x51 ECL2 hydrophobic
SI I196 45.51x51 ECL2 Van der Waals
SI M197 45.52x52 ECL2 polar (hydrogen bond with backbone)
SI M197 45.52x52 ECL2 Van der Waals
SI Y204 5.31x32 TM5 polar (hydrogen bond)
SI S208 5.35x36 TM5 Van der Waals
SI K215 5.42x43 TM5 polar (charge-assisted hydrogen bond)
SI F272 6.51x51 TM6 hydrophobic
SI F272 6.51x51 TM6 Van der Waals
SI D279 6.58x58 TM6 polar (charge-assisted hydrogen bond)
SI W283 6.62x62 TM6 hydrophobic
SI W283 6.62x62 TM6 Van der Waals
SI I293 7.28x27 TM7 Van der Waals
SI D297 7.32x31 TM7 polar (charge-assisted hydrogen bond)
SI L300 7.35x34 TM7 hydrophobic
SI L300 7.35x34 TM7 Van der Waals
SI P301 7.36x35 TM7 Van der Waals
SI I304 7.39x38 TM7 hydrophobic
SI I304 7.39x38 TM7 Van der Waals
SI F308 7.43x42 TM7 Van der Waals
SI F308 7.43x42 TM7 hydrophobic

SI

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

Snake plot — Download: PNG | SVG
ICL1 K G P K K ICL1ECL1 Y D W L F ECL1ICL2 P F L S Q R R ICL2ECL2 D V R T I E Y L G V N A C I M A F P P E ECL2ICL3 N S Y ICL3ECL3 V I N ECL3N-term M K G N S T L A T T S K N I T S G L H F G L V N I S G N N E S T L N C S Q K P S D K H L N-termC-term I T W L Q G K R E S M S C R K S S S L R E M E T F V S C-term D A I P I L Y Y I I F V I G F L V N I V V V T L F C C Q V S S I Y I F N L A V A D L L L L A T L P L W A T Y Y S Y R G P V M C K V F G S F L T L N M F A S I F F I T C M S V D R Y Q S V I Y N P W Q A S Y I V P L V W C M A C L S S L P T F Y F R K Y A Q W S A G I A L M K N I L G F I I P L I F I A T C Y F G I R K H L L K T G K N R I T R D Q V L K M A A A V V L A F I I C W L P F H V L T F L D A L A W M G S C E V I A V I D L A L P F A I L L G F T N S C V N P F L Y C F V G N R L R S P F Q Q K V F R V
Helix box plot — Download: PNG | SVG I N V L F G I V F I I Y Y L I P I A D 1 F N L A V A D L L L L A T L P L W A T Y 2 C T I F F I S A F M N L T L F S G F V K 3 A S Y I V P L V W C M A C L S S L P T 4 Y C T A I F I L P I I F G L I N K M L A I 5 A A V V L A F I I C W L P F H V L T F L 6 F P N V C S N T F G L L I A F P L A L 7

GPCRdb(A)
GPCRdb(A)
AT2 receptor
TM2
2x60 2.60x60 W100
2x63 2.63x63 Y103
2x64 2.64x64 Y104
TM3
3x32 3.32x32 L124
TM4
4x65 4.64x65 R182
ECL2
45x50 45.50x50 C195
45x51 45.51x51 I196
45x52 45.52x52 M197
TM5
5x32 5.31x32 Y204
5x36 5.35x36 S208
5x43 5.42x43 K215
TM6
6x51 6.51x51 F272
6x58 6.58x58 D279
6x62 6.62x62 W283
TM7
7x27 7.28x27 I293
7x31 7.32x31 D297
7x34 7.35x34 L300
7x35 7.36x35 P301
7x38 7.39x38 I304
7x42 7.43x42 F308