Structure information

GLP-2 receptor

PROTEIN CLASS

Class B1 (Secretin)

PDB CODE

7D68

SPECIES

Homo sapiens

RESOLUTION

3.000

PREFERRED CHAIN

R

PUBLICATION DATE

Dec. 16, 2020

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

Ligand Interaction Browser

Download list in excel
Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
glucagon F165 N-term hydrophobic
glucagon N168 1.29x29 TM1 polar (hydrogen bond)
glucagon Y172 1.33x33 TM1 hydrophobic
glucagon L175 1.36x36 TM1 hydrophobic
glucagon Y182 1.43x43 TM1 aromatic (edge-to-face)
glucagon Y186 1.47x47 TM1 polar (charge-assisted hydrogen bond)
glucagon K231 2.67x67 TM2 polar (charge-assisted hydrogen bond)
glucagon Y239 2.75x75 TM2 hydrophobic
glucagon R242 ECL1 polar (charge-charge)
glucagon R242 ECL1 polar (charge-assisted hydrogen bond)
glucagon R242 ECL1 polar (charge-assisted hydrogen bond)
glucagon D244 ECL1 polar (charge-assisted hydrogen bond)
glucagon W249 ECL1 aromatic (face-to-edge)
glucagon H268 3.37x37 TM3 polar (hydrogen bond)
glucagon H268 3.37x37 TM3 aromatic (face-to-edge)
glucagon T332 45.52x52 ECL2 polar (hydrogen bond)
glucagon W340 5.36x37 TM5 hydrophobic
glucagon K414 7.35x34 TM7 polar (charge-charge)
glucagon L418 7.39x38 TM7 hydrophobic
glucagon L422 7.43x42 TM7 hydrophobic

Ligands

glucagon

3D interaction viewer Download PDB file

NGL is a WebGL based 3D viewer powered by MMTF.


Residue Diagrams

F L S I L S F S Y G V T Y M L Q L T S L 1 M N L F A S F I L R T L A V L V K D V V 2 V L L W L Y N A G V F Y H L L V Q V S R 3 L W P R Y L L G L W A F P V L F V V P W G 4 F I F F N V T V C L M M P G R I I W W I K 5 L V L I P L L G V H E I L F S F 6 L A V L F G H F S S L T L Q I F L R I 7
Download: PNG | SVG
ICL1 R K L H ICL1ECL1 S K R P D N E N G W M S Y L S E M S ECL1ICL2 T V L P E R R ICL2ECL2 N T G C W T T N G N K ECL2ICL3 A H Q M ICL3ECL3 I T D D Q V E ECL3N-term M K L G S S R A G P G R G S A G L L P G V H E L P M G I P A P W G T S P L S F H R K C S L W A P G R P F L T L V L L V S I K Q V T G S L L E E T T R K W A Q Y K Q A C L R D L L K E P S G I F C N G T F D Q Y V C W P H S S P G N V S V P C P S Y L P W W S E E S S G R A Y R H C L A Q G T W Q T I E N A T D I W Q D D S E C S E N H S F N-termC-term V L G K D F R F L G K C P K K L S E G D G A E K L R K L Q P S L N S G R L L H L A M R G L G E L G A Q P Q Q D H A R W P R G S S L S E C S E G D V T M A N T M E E I L E E S E I C-term K Q N V D R Y A L L S T L Q L M Y T V G Y S F S L I S L F L A L T L L L F L C T R N Y I H M N L F A S F I L R T L A V L V K D V V F Y N S Y T S C R S V Q V L L H Y F V G A N Y L W L L V E G L Y L H T L L E P L W P R Y L L L G W A F P V L F V V P W G F A R A H L E K I W W I I R G P M M L C V T V N F F I F L K I L K L L I S K L K C F R D Y K Y R L A K S T L V L I P L L G V H E I L F S F G F A K L I R L F I Q L T L S S F H G F L V A L Q Y G F A N G E L R K F L L G C R V K A E Y W V R A R H S A C
Download: PNG | SVG

Residue Table


GPCRdb(A)
GPCRdb(B)
GLP-2 receptor
TM1
1x25 1.29x29 N168
1x29 1.33x33 Y172
1x32 1.36x36 L175
1x39 1.43x43 Y182
1x43 1.47x47 Y186
TM2
2x60 2.67x67 K231
2x68 2.75x75 Y239
TM3
3x33 3.37x37 H268
ECL2
45x52 45.52x52 T332
TM5
5x41 5.36x37 W340
TM7
7x30 7.35x34 K414
7x34 7.39x38 L418
7x38 7.43x42 L422