Structure information

S1P5 receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

7EW1

SPECIES

Homo sapiens

RESOLUTION

3.400

PREFERRED CHAIN

A

REFERENCE

10.1038/S41422-021-00566-X

PUBLICATION DATE

Sept. 29, 2021

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

Ligand Interaction Browser

Download list in excel
Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
siponimod K24 N-term polar (charge-assisted hydrogen bond)
siponimod N92 2.60x60 TM2 polar (hydrogen bond)
siponimod W108 3.25x25 TM3 Van der Waals
siponimod W108 3.25x25 TM3 polar (hydrogen bond)
siponimod E112 3.29x29 TM3 Van der Waals
siponimod F116 3.33x33 TM3 hydrophobic
siponimod F116 3.33x33 TM3 Van der Waals
siponimod L119 3.36x36 TM3 hydrophobic
siponimod L119 3.36x36 TM3 Van der Waals
siponimod T120 3.37x37 TM3 Van der Waals
siponimod V123 3.40x40 TM3 hydrophobic
siponimod V123 3.40x40 TM3 Van der Waals
siponimod C197 5.43x43 TM5 polar (hydrogen bond)
siponimod F201 5.47x47 TM5 Van der Waals
siponimod F201 5.47x47 TM5 hydrophobic
siponimod L267 6.51x51 TM6 hydrophobic
siponimod L267 6.51x51 TM6 Van der Waals
siponimod A288 7.35x34 TM7 Van der Waals
siponimod L292 7.39x38 TM7 Van der Waals
siponimod L292 7.39x38 TM7 hydrophobic

Ligands

siponimod

3D interaction viewer Download PDB file

NGL is a WebGL based 3D viewer powered by MMTF.


Residue Diagrams

L N E L V I F A C V A L C V V A D A R 1 G S L T L S D L L A G A A Y A A N I L L 2 A L L S L V S A T L A V F V G G E R A F 3 T L A M A A A A W G V S L L L G L L P A 4 Y L A C I A A L I G V F A L V C F L V Y 5 S V V L L A F V A C W G P L F L L L L L 6 I P N L L S N A M A L G L F P D A Q L 7
Download: PNG | SVG
ICL1 P R F H ICL1ECL1 G P L T L K L ECL1ICL2 R G P A P V S ICL2ECL2 W N C L G R L D A C S T V L P L Y ECL2ICL3 T T S T ICL3ECL3 P A R T C ECL3N-term M E S G L L R P A P V S E V I V L H Y N Y T G K L R G A R Y Q P G A G L N-termC-term C G R H S C G R D P S G S Q Q S A S A A E A S G G L R R C L P P G L D G S F S G S E R S S P Q R D G L D T S G S T G S P G A P T A A R T L V S E P A A D C-term R A D A V V C L A V C A F I V L E N L A V L L V L G R H A P M F L L L G S L T L S D L L A G A A Y A A N I L L S S P A L W F A R E G G V F V A L T A S V L S L L A I A L E R S L T M A R S R G R T L A M A A A A W G V S L L L G L L P A L G A K A Y V L F C V L A F V G I L A A I C A L Y A R I Y C Q V R A N A R R L P A R P G T A G R A R R K P R S L A L L R T L S V V L L A F V A C W G P L F L L L L L D V A C P V L L Q A D P F L G L A M A N S L L N P I I Y T L T N R D L L R L R H A L V C
Download: PNG | SVG

Residue Table


GPCRdb(A)
GPCRdb(A)
S1P5 receptor
TM2
2x60 2.60x60 N92
TM3
3x25 3.25x25 W108
3x29 3.29x29 E112
3x33 3.33x33 F116
3x36 3.36x36 L119
3x37 3.37x37 T120
3x40 3.40x40 V123
TM5
5x43 5.43x43 C197
5x47 5.47x47 F201
TM6
6x51 6.51x51 L267
TM7
7x34 7.35x34 A288
7x38 7.39x38 L292