PDB
7SRR
Resolution
2.9 Å
Released
Sept. 21, 2022
Receptor
5-HT2B
Class
A
Species
Homo sapiens
Ligand
(+)-LSD
Function
Agonist (partial)
Reference
10.1016/J.NEURON.2022.08.006

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Ligand Amino Acid Generic Number Segment Interaction Type
(+)-LSD W131 3.28x28 TM3 hydrophobic
(+)-LSD D135 3.32x32 TM3 polar (charge-assisted hydrogen bond)
(+)-LSD V136 3.33x33 TM3 hydrophobic
(+)-LSD V136 3.33x33 TM3 Van der Waals
(+)-LSD F217 5.38x39 TM5 hydrophobic
(+)-LSD G221 5.42x43 TM5 polar (hydrogen bond with backbone)
(+)-LSD G221 5.42x43 TM5 Van der Waals
(+)-LSD A225 5.46x461 TM5 Van der Waals
(+)-LSD F340 6.51x51 TM6 Van der Waals
(+)-LSD F340 6.51x51 TM6 hydrophobic
(+)-LSD F341 6.52x52 TM6 aromatic (edge-to-face)
(+)-LSD V366 7.39x38 TM7 Van der Waals
(+)-LSD V366 7.39x38 TM7 hydrophobic

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ICL1 K K L Q ICL1ECL1 E A M W P L ECL1ICL2 P I Q A N Q Y N ICL2ECL2 I E T D V D N P N N I T C V L T K E R ECL2ICL3 P Q R L T W L T V S T V F Q R D E T P C S S P E K V A M L D G S R K D K A L P N S G D E T L M R R T S T I G K K S ICL3ECL3 D S C ECL3N-term M A L S Y R V S E L Q S T I P E H I L Q S T F V H V I S S N W S G L Q T E S I P E E M K Q I V E E Q G N N-termC-term T C N Y R A T K S V K T L R K R S S K I Y F R N P M A E N S K F F K K H G I R N G I N P A M Y Q S P M R L R S S T I Q S S S I I L L D T L L L T E N E G D K T E E Q V S Y V C-term K L H W A A L L I L M V I I P T I G G N T L V I L A V S L E Y A T N Y F L M S L A V A D L L V G L F V M P I A L L T I M F P L V L C P A W L F L D V L F S T A S I M H L C A I S V D R Y I A I K K S R A T A F I K I T V V W L I S I G I A I P V P I K G F G D F M L F G S L A A F F T P L A I M I V T Y F L T I H A L Q K K A Y L V K N K P V Q T I S N E Q R A S K V L G I V F F L F L L M W C P F F I T N I T L V L C N Q T T L Q M L L E I F V W I G Y V S S G V N P L V Y T L F N K T F G R F R D A Y I
Helix box plot — Download: PNG | SVG T N G G I T P I I V M L I L L A A W H L K 1 M S L A V A D L L V G F L V M P I A L L T 2 A C L H M I S A T S F L V D L F L W A P 3 A F I K I T V V W L I S I G I A I P V 4 Y T V I M I A L P T F F A A L S G F L M F 5 G I V F F L F L L M W C P F F I T N I T 6 L P N V G S S V Y G I W V F I E L L M 7

GPCRdb(A)
GPCRdb(A)
5-HT2B receptor
TM3
3x28 3.28x28 W131
3x32 3.32x32 D135
3x33 3.33x33 V136
TM5
5x39 5.38x39 F217
5x43 5.42x43 G221
5x461 5.46x461 A225
TM6
6x51 6.51x51 F340
6x52 6.52x52 F341
TM7
7x38 7.39x38 V366