Structure information

P2Y1 receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

7XXH

SPECIES

Homo sapiens

RESOLUTION

2.900

PREFERRED CHAIN

R

REFERENCE

PUBLICATION DATE

June 7, 2023

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
2MeSADP Y110 2.63x63 TM2 polar (hydrogen bond)
2MeSADP Y110 2.63x63 TM2 polar (hydrogen bond)
2MeSADP Y111 2.64x64 TM2 polar (hydrogen bond)
2MeSADP R128 3.29x29 TM3 polar (charge-assisted hydrogen bond)
2MeSADP T201 ECL2 Van der Waals
2MeSADP C202 45.50x50 ECL2 Van der Waals
2MeSADP C202 45.50x50 ECL2 polar (hydrogen bond with backbone)
2MeSADP Y203 45.51x51 ECL2 aromatic (edge-to-face)
2MeSADP Y203 45.51x51 ECL2 Van der Waals
2MeSADP D204 45.52x52 ECL2 Van der Waals
2MeSADP T205 ECL2 polar (hydrogen bond)
2MeSADP T206 ECL2 polar (hydrogen bond with backbone)
2MeSADP T206 ECL2 Van der Waals
2MeSADP R287 6.62x62 TM6 polar (charge-assisted hydrogen bond)
2MeSADP Y303 7.32x31 TM7 aromatic (face-to-face)
2MeSADP Y303 7.32x31 TM7 Van der Waals
2MeSADP R310 7.39x38 TM7 Van der Waals

Ligands

2MeSADP

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Residue Diagrams

S N G L F G I I F V L I Y V A P L Y Y F 1 F N L A L A D F L Y V L T L P A L I F Y 2 C T L F L I S G Y L N V H F I F R Q L K 3 A I C I S V L V W L I V V V A I S P I L 4 Y C G L I L V L P V C F M A V T T C M S Y 5 V I I V L T V F V A S Y I P F H V M K T M 6 I P D V C S N L S A L G R T V Q Y T A 7
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ICL1 M K P W ICL1ECL1 K T D W I F ECL1ICL2 P L K S L G R L ICL2ECL2 G T G V R K N K T I T C Y D T T S D E Y ECL2ICL3 D L D N S ICL3ECL3 F Q T P A ECL3N-term M T E V L W P A V P N G T D A A F L A G P G S S W G N S T V A S T A A V S S S F K C A L T K T G N-termC-term K A S R R S E A N L Q S K S E D M T L N I L P E F K Q N G D T S L C-term F Q F Y Y L P A V Y I L V F I I G F L G N S V A I W M F V F H S G I S V Y M F N L A L A D F L Y V L T L P A L I F Y Y F N G D A M C K L Q R F I F H V N L Y G S I L F L T C I S A H R Y S G V V Y K K K N A I C I S V L V W L I V V V A I S P I L F Y S L R S Y F I Y S M C T T V A M F C V P L V L I L G C Y G L I V R A L I Y K P L R R K S I Y L V I I V L T V F A V S Y I P F H V M K T M N L R A R L D M C A F N D R V Y A T Y Q V T R G L A S L N S C V D P I L Y F L A G D T L S R F R R R A T R
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Residue Table


GPCRdb(A)
GPCRdb(A)
P2Y1 receptor
TM2
2x63 2.63x63 Y110
2x64 2.64x64 Y111
TM3
3x29 3.29x29 R128
ECL2
45x50 45.50x50 C202
45x51 45.51x51 Y203
45x52 45.52x52 D204
TM6
6x62 6.62x62 R287
TM7
7x31 7.32x31 Y303
7x38 7.39x38 R310