Structure information

C5a1 receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

7Y66

SPECIES

Homo sapiens

RESOLUTION

2.900

PREFERRED CHAIN

D

REFERENCE

10.1038/S41422-023-00779-2

PUBLICATION DATE

March 1, 2023

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
BM213 L92 2.60x60 TM2 hydrophobic
BM213 L187 ECL2 hydrophobic
BM213 C188 45.50x50 ECL2 Van der Waals
BM213 C188 45.50x50 ECL2 polar (hydrogen bond with backbone)
BM213 G189 45.51x51 ECL2 Van der Waals
BM213 V190 45.52x52 ECL2 Van der Waals
BM213 V190 45.52x52 ECL2 polar (hydrogen bond with backbone)
BM213 D191 ECL2 polar (charge-assisted hydrogen bond)
BM213 Y258 6.51x51 TM6 polar (hydrogen bond with backbone)
BM213 Y258 6.51x51 TM6 Van der Waals
BM213 T261 6.54x54 TM6 polar (hydrogen bond)
BM213 G262 6.55x55 TM6 Van der Waals
BM213 M265 6.58x58 TM6 Van der Waals
BM213 F275 7.28x27 TM7 hydrophobic
BM213 K279 7.32x31 TM7 Van der Waals
BM213 D282 7.35x34 TM7 polar (charge-assisted hydrogen bond)

Ligands

BM213

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Residue Diagrams

A N G L V G V L F V V A F I V L A L I D 1 L N L A V A D F L S C L A L P I L F T S 2 T A L L L I S A Y M N L L I L S P L I S 3 A W I A C A V A W G L A L L L T I P S 4 Y C I T L T L L P W L F G L V L R V I A V 5 V A V V A S F F I F W L P Y Q V T G I M 6 I P N I C C N I Y A F S V C L S D L K 7
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ICL1 A K R ICL1ECL1 H H W P F ECL1ICL2 P I W C Q N F R ICL2ECL2 V V R E E Y F P P K V L C G V D Y S H ECL2ICL3 R A T R S ICL3ECL3 E P S ECL3N-term M D S F N Y T T P D Y G H Y D D K D T L D L N T P V D K T S N T L N-termC-term Q G F Q G R L R K S L P S L L R N V L T E E S V V R E S K S F T R S T V D T M A Q K T Q A V C-term R V P D I L A L V I F A V V F L V G V L G N A L V V W V T A F E T I N A I W F L N L A V A D F L S C L A L P I L F T S I V Q H G G A A C S I L P S L I L L N M Y A S I L L L A T I S A D R F L L V F K G A G L A W I A C A V A W G L A L L L T I P S F L Y R D K R R E R A V A I V R L V L G F L W P L L T L T I C Y T F I L L R T W S R T K T L K V V V A V V A S F F I F W L P Y Q V T G I M M S F L S P T F L L L K K L D S L C V S F A Y I N C C I N P I I Y V V A G
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Residue Table


GPCRdb(A)
GPCRdb(A)
C5a1 receptor
TM2
2x60 2.60x60 L92
ECL2
45x50 45.50x50 C188
45x51 45.51x51 G189
45x52 45.52x52 V190
TM6
6x51 6.51x51 Y258
6x54 6.54x54 T261
6x55 6.55x55 G262
6x58 6.58x58 M265
TM7
7x27 7.28x27 F275
7x31 7.32x31 K279
7x34 7.35x34 D282