PDB
8DZQ
Resolution
2.8 Å
Released
May 3, 2023
Receptor
κ
Class
A
Species
Homo sapiens
Ligand
CHEMBL180126
Function
Agonist
Reference
10.1038/S41586-023-06030-7

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Ligand Amino Acid Generic Number Segment Interaction Type
CHEMBL180126 L135 3.29x29 TM3 hydrophobic
CHEMBL180126 M142 3.36x36 TM3 hydrophobic
CHEMBL180126 W287 6.48x48 TM6 hydrophobic
CHEMBL180126 I294 6.55x55 TM6 hydrophobic
CHEMBL180126 Y312 7.35x34 TM7 hydrophobic
CHEMBL180126 I316 7.39x38 TM7 hydrophobic
CHEMBL180126 Y320 7.43x42 TM7 hydrophobic

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Snake plot — Download: PNG | SVG
ICL1 T K M K ICL1ECL1 S W P F ECL1ICL2 P V K A L D F R ICL2ECL2 G T K V R E D V D V I E C S L Q F P D D ECL2ICL3 R L L S G ICL3ECL3 S T S H ECL3N-term M D S P I Q I F R G E P G P T C A P S A C L P P N S S A W F P G W A E P D S N G S A G S E D A Q L E P A H I S P N-termC-term P L K M R M E R Q S T S R V R N T V Q D P A Y L R D I D G M N K P V C-term A I P V I I T A V Y S V V F V V G L V G N S L V M F V I I R Y T A T N I Y I F N L A L A D A L V T T T M P F Q S T V Y L M N G D V L C K I V I S I D Y Y N M F T S I F T L T M M S V D R Y I A V C H T P L K A K I I N I C I W L L S S S V G I S A I V L G D Y S W W D L F M K I C V F I F A F V I P V L I I I V C Y T L M I L R L K S V S R E K D R N L R R I T R L V L V V V A V F V V C W T P I H I F I L V E A L G S T A A L S S Y Y F C I A L G Y T N S S L N P I L Y A F L D E N F R D F K R C F C F
Helix box plot — Download: PNG | SVG S N G V L G V V F V V S Y V A T I I V P 1 F N L A L A D A L V T T T M P F Q S T V 2 M T L T F I S T F M N Y Y D I S I V I K 3 A K I I N I C I W L L S S S V G I S A I 4 Y C V I I I L V P I V F A F I F V C I K M 5 L V V V A V F V V C W T P I H I F I L V 6 I P N L S S N T Y G L A I C F Y Y S S 7

GPCRdb(A)
GPCRdb(A)
κ receptor
TM3
3x29 3.29x29 I135
3x36 3.36x36 M142
TM6
6x48 6.48x48 W287
6x55 6.55x55 I294
TM7
7x34 7.35x34 Y312
7x38 7.39x38 I316
7x42 7.43x42 Y320