Structure information

D1 receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

8IRR

SPECIES

Homo sapiens

RESOLUTION

3.200

PREFERRED CHAIN

R

REFERENCE

10.1038/S41422-023-00808-0

PUBLICATION DATE

June 21, 2023

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
rotigotine K81 2.61x60 TM2 polar (charge-assisted hydrogen bond)
rotigotine W99 3.28x28 TM3 polar (hydrogen bond)
rotigotine D103 3.32x32 TM3 polar (charge-assisted hydrogen bond)
rotigotine I104 3.33x33 TM3 Van der Waals
rotigotine I104 3.33x33 TM3 polar (hydrogen bond with backbone)
rotigotine S107 3.36x36 TM3 polar (hydrogen bond)
rotigotine T108 3.37x37 TM3 polar (hydrogen bond)
rotigotine S188 45.52x52 ECL2 polar (hydrogen bond)
rotigotine L190 ECL2 Van der Waals
rotigotine Y194 5.38x39 TM5 Van der Waals
rotigotine A195 5.39x40 TM5 Van der Waals
rotigotine S198 5.42x43 TM5 polar (hydrogen bond)
rotigotine S198 5.42x43 TM5 polar (hydrogen bond with backbone)
rotigotine S199 5.43x44 TM5 Van der Waals
rotigotine S199 5.43x44 TM5 polar (hydrogen bond with backbone)
rotigotine S202 5.46x461 TM5 polar (hydrogen bond)
rotigotine W285 6.48x48 TM6 Van der Waals
rotigotine W285 6.48x48 TM6 hydrophobic
rotigotine F288 6.51x51 TM6 hydrophobic
rotigotine F288 6.51x51 TM6 Van der Waals
rotigotine F289 6.52x52 TM6 aromatic (edge-to-face)
rotigotine F289 6.52x52 TM6 polar (hydrogen bond)
rotigotine N292 6.55x55 TM6 polar (hydrogen bond)
rotigotine N292 6.55x55 TM6 polar (hydrogen bond)
rotigotine F313 7.35x34 TM7 Van der Waals
rotigotine F313 7.35x34 TM7 hydrophobic
rotigotine D314 7.36x35 TM7 polar (charge-assisted hydrogen bond)
rotigotine V317 7.39x38 TM7 polar (hydrogen bond)
rotigotine V317 7.39x38 TM7 polar (hydrogen bond with backbone)
rotigotine G320 7.42x41 TM7 Van der Waals
rotigotine W321 7.43x42 TM7 polar (hydrogen bond with backbone)
rotigotine W321 7.43x42 TM7 polar (hydrogen bond)

Ligands

rotigotine

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Residue Diagrams

T N G L L T S L I L L S L F C A T L I R 1 I S L A V S D L L V A L V V M P W K A V A 2 V C L N L I S A T S C M I D F A V W I N 3 A F I L I S V A W T L S V L I S F I P V 4 Y T V I M I A V P I Y F S I V S S S I A Y 5 S V I M G V F V C C W L P F F I L N C I 6 I P N L S S N A W G F W V F V D F T N 7
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ICL1 R H L R S ICL1ECL1 F W P F ECL1ICL2 P F R Y E R K M ICL2ECL2 W H K A K P T S P S D G N A T S L A E T I D N C D S S L ECL2ICL3 T T T G N G K P V E C S Q P E S S F ICL3ECL3 G S G E T Q P F C I ECL3N-term M R T L N T S A M D G T G L V V E R D F N-termC-term C Y R L C P A T N N A I E T V S I N N N G A A M F S S H H E P R G S I S K E C N L V Y L I P H A V G S S E D L K K E E A A G I A R P L E K L S P A L S V I L D Y D T D V S L E K I Q P I T Q N G Q H P T C-term S V R I L T A C F L S L L I L S T L L G N T L V C A A V I R F K V T N F F V I S L A V S D L L V A V L V M P W K A V A E I A G G S F C N I W V A F D I M C S T A S I L N L C V I S V D R Y W A I S S T P K A A F I L I S V A W T L S V L I S F I P V Q L S S R T Y A I S S S V I S F Y I P V A I M I V T Y T R I Y R I A Q K Q I R R I A A L E R A A V H A K N C Q K M S F K R E T K V L K T L S V I M G V F V C C W L P F F I L N C I L P F C D S N T F D V F V W F G W A N S S L N P I I Y A F N A D F S T F R K A L L G
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Residue Table


GPCRdb(A)
GPCRdb(A)
D1 receptor
TM2
2x60 2.61x60 K81
TM3
3x28 3.28x28 W99
3x32 3.32x32 D103
3x33 3.33x33 I104
3x36 3.36x36 S107
3x37 3.37x37 T108
ECL2
45x52 45.52x52 S188
TM5
5x39 5.38x39 Y194
5x40 5.39x40 A195
5x43 5.42x43 S198
5x44 5.43x44 S199
5x461 5.46x461 S202
TM6
6x48 6.48x48 W285
6x51 6.51x51 F288
6x52 6.52x52 F289
6x55 6.55x55 N292
TM7
7x34 7.35x34 F313
7x35 7.36x35 D314
7x38 7.39x38 V317
7x41 7.42x41 G320
7x42 7.43x42 W321