Structure information

OPN1LW

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

8IU2

SPECIES

Homo sapiens

RESOLUTION

3.350

PREFERRED CHAIN

R

REFERENCE

PUBLICATION DATE

March 27, 2024

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

Ligand Interaction Browser

Download list in excel
Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
Retinal (11-cis) V133 3.32x32 TM3 hydrophobic
Retinal (11-cis) P205 45.52x52 ECL2 hydrophobic
Retinal (11-cis) W281 6.48x48 TM6 hydrophobic
Retinal (11-cis) Y284 6.51x51 TM6 hydrophobic

Ligands

Retinal (11-cis)

3D interaction viewer Download PDB file

NGL is a WebGL based 3D viewer powered by MMTF.


Residue Diagrams

G N T F V S A T V V F I M W V S T L H Y 1 V N L A V A D L A E T V I A S T I S I V 2 I A L S W L G T I G C L S V T Y G E L V 3 A I V G I A F S W I W A A V W T A P P I 4 Y C L M I I A L P I I C C T V M L V I M Y 5 V V M I F A Y C V C W G P Y T F F A C F 6 V P N Y I T A S K A F Y A P L A A M L 7
Download: PNG | SVG
ICL1 K K L R ICL1ECL1 Y F V L ECL1ICL2 P F G N V R F ICL2ECL2 W S R Y W P H G L K T S C G P D V F S G S S Y P ECL2ICL3 K E ICL3ECL3 G Y A F ECL3N-term M A Q Q W S L Q R L A G R H P Q D S Y E D S T Q S S I F T Y T N S N S T R G P F E G P N Y H I A N-termC-term K K V D D G S E L S S A S K T E V S S V S S V S P A C-term P R W V Y H L T S V W M I F V V T A S V F T N G L V L A A T M K F H P L N W I L V N L A V A D L A E T V I A S T I S I V N Q V S G G H P M C V L E G Y T V S L C G I T G L W S L A I I S W E R W M V V C K D A K L A I V G I A F S W I W A A V W T A P P I F G G V Q S Y M I V L M V T C C I I P L A I I M L C Y L Q V W L A I R A V A K Q Q S E S T Q K A E K E V T R M V V V M I F A Y C V C W G P Y T F F A C F A A A N P H P L M A A L P A Y F A K S A T I Y N P V I Y V F M N R Q I L Q F R N C L F G
Download: PNG | SVG

Residue Table


GPCRdb(A)
GPCRdb(A)
OPN1LW
TM3
3x32 3.32x32 V133
ECL2
45x52 45.52x52 P205
TM6
6x48 6.48x48 W281
6x51 6.51x51 Y284