Structure information

GPR84

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

8J19

SPECIES

Homo sapiens

RESOLUTION

3.230

PREFERRED CHAIN

R

REFERENCE

10.1038/S41467-023-38985-6

PUBLICATION DATE

June 21, 2023

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

Ligand Interaction Browser

Download list in excel
Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
6-nonylpyridine-2,4-diol L100 3.32x32 TM3 hydrophobic
6-nonylpyridine-2,4-diol F101 3.33x33 TM3 hydrophobic
6-nonylpyridine-2,4-diol F152 4.57x57 TM4 hydrophobic
6-nonylpyridine-2,4-diol V165 ECL2 hydrophobic
6-nonylpyridine-2,4-diol S169 45.51x51 ECL2 polar (hydrogen bond)
6-nonylpyridine-2,4-diol R172 ECL2 polar (charge-assisted hydrogen bond)
6-nonylpyridine-2,4-diol L182 5.42x43 TM5 hydrophobic
6-nonylpyridine-2,4-diol L182 5.42x43 TM5 Van der Waals
6-nonylpyridine-2,4-diol M183 5.43x44 TM5 hydrophobic
6-nonylpyridine-2,4-diol M183 5.43x44 TM5 Van der Waals
6-nonylpyridine-2,4-diol Y186 5.46x461 TM5 Van der Waals
6-nonylpyridine-2,4-diol Y186 5.46x461 TM5 hydrophobic
6-nonylpyridine-2,4-diol F335 6.51x51 TM6 hydrophobic
6-nonylpyridine-2,4-diol F335 6.51x51 TM6 Van der Waals
6-nonylpyridine-2,4-diol A356 7.39x38 TM7 hydrophobic
6-nonylpyridine-2,4-diol A356 7.39x38 TM7 Van der Waals
6-nonylpyridine-2,4-diol T359 7.42x41 TM7 Van der Waals
6-nonylpyridine-2,4-diol W360 7.43x42 TM7 polar (hydrogen bond)
6-nonylpyridine-2,4-diol W360 7.43x42 TM7 Van der Waals

Ligands

6-nonylpyridine-2,4-diol

3D interaction viewer Download PDB file

NGL is a WebGL based 3D viewer powered by MMTF.


Residue Diagrams

V N G V T G T V A V V V G W S V A V Y R 1 A N L T L A D L L Y C L T L Q P F S V D T 2 L C L T L I S V S N S A F L L L G F V R 3 I V L A L V S T W V V G V A S F A P L 4 Y F I G V S S L G L V F Y I G M L I T T Y 5 F A V F L C F A L S Y I P F L L L N I L 6 V P N I C G N L W T L N A A L M H V V 7
Download: PNG | SVG
ICL1 P K L R ICL1ECL1 L H W R T ECL1ICL2 P K L F P Q V F ICL2ECL2 I L V P V V C T C S F D R I R ECL2ICL3 L R Q A S I H S N H V A R T D E A M P G R F Q E L D S R L A S G G P S E G I S S E P V S A A T T Q T L E G D S S E V G D Q I N S K R A K Q M A E K S P P E A S A K A Q P I K G A R R A ICL3ECL3 R V Q A P R ECL3N-term M W N S S D A N F S C Y H E S V L N-termC-term G P R S F H R L H C-term G Y R Y V A V S W G V V V A V T G T V G N V L T L L A L A I Q T R F N L L I A N L T L A D L L Y C T L L Q P F S V D T Y L H G A T F C R V F G L L L F A S N S V S I L T L C L I A L G R Y L L I A H S A K G I V L A L V S T W V V G V A S F A P L W P I Y G R P Y T T I L M G I Y F V L G L S S V G I F Y C L I H R Q V K R A A Q A L D Q Y K P D S S S E F G K V T R M C F A V F L C F A L S Y I P F L L L N I L D A V V H M L A A N L T W L N G C I N P V L Y A A M N R Q Y G S F R Q A I L K R
Download: PNG | SVG

Residue Table


GPCRdb(A)
GPCRdb(A)
GPR84
TM3
3x32 3.32x32 L100
3x33 3.33x33 F101
TM4
4x57 4.57x57 F152
ECL2
45x51 45.51x51 S169
TM5
5x43 5.42x43 L182
5x44 5.43x44 M183
5x461 5.46x461 Y186
TM6
6x51 6.51x51 F335
TM7
7x38 7.39x38 A356
7x41 7.42x41 T359
7x42 7.43x42 W360