Structure information

CXCR4

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

8U4R

SPECIES

Homo sapiens

RESOLUTION

3.100

PREFERRED CHAIN

R

REFERENCE

10.1038/S41594-024-01397-1

PUBLICATION DATE

March 13, 2024

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
REGN7663 Fab heavy chain M24 N-term hydrophobic
REGN7663 Fab heavy chain M24 N-term Van der Waals
REGN7663 Fab heavy chain K25 N-term Van der Waals
REGN7663 Fab heavy chain E26 N-term polar (charge-assisted hydrogen bond)
REGN7663 Fab heavy chain P27 N-term hydrophobic
REGN7663 Fab heavy chain P27 N-term Van der Waals
REGN7663 Fab heavy chain C28 N-term Van der Waals
REGN7663 Fab heavy chain F29 N-term Van der Waals
REGN7663 Fab heavy chain F29 N-term aromatic (face-to-face)
REGN7663 Fab heavy chain R30 N-term polar (charge-assisted hydrogen bond)
REGN7663 Fab heavy chain R30 N-term polar (hydrogen bond with backbone)
REGN7663 Fab heavy chain E32 N-term polar (charge-assisted hydrogen bond)
REGN7663 Fab heavy chain E179 ECL2 Van der Waals
REGN7663 Fab heavy chain E179 ECL2 polar (hydrogen bond with backbone)
REGN7663 Fab heavy chain A180 ECL2 hydrophobic
REGN7663 Fab heavy chain A180 ECL2 Van der Waals
REGN7663 Fab heavy chain D181 ECL2 polar (charge-assisted hydrogen bond)
REGN7663 Fab heavy chain R183 ECL2 Van der Waals
REGN7663 Fab heavy chain I185 ECL2 hydrophobic
REGN7663 Fab heavy chain I185 ECL2 Van der Waals
REGN7663 Fab heavy chain D187 45.51x51 ECL2 polar (charge-assisted hydrogen bond)
REGN7663 Fab heavy chain R188 45.52x52 ECL2 Van der Waals
REGN7663 Fab heavy chain R188 45.52x52 ECL2 polar (hydrogen bond with backbone)
REGN7663 Fab heavy chain F189 ECL2 hydrophobic
REGN7663 Fab heavy chain F189 ECL2 Van der Waals
REGN7663 Fab heavy chain Y190 ECL2 hydrophobic
REGN7663 Fab heavy chain Y190 ECL2 Van der Waals
REGN7663 Fab heavy chain P191 ECL2 polar (hydrogen bond with backbone)
REGN7663 Fab heavy chain P191 ECL2 Van der Waals
REGN7663 Fab heavy chain N192 ECL2 Van der Waals
REGN7663 Fab heavy chain D193 5.32x33 TM5 Van der Waals
REGN7663 Fab heavy chain W195 5.34x35 TM5 Van der Waals
REGN7663 Fab heavy chain Y255 6.51x51 TM6 Van der Waals
REGN7663 Fab heavy chain E288 7.39x38 TM7 polar (charge-assisted hydrogen bond)

Ligands

REGN7663 Fab heavy chain

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Residue Diagrams

G N G V I G T L F I I S Y I T P L F I K 1 L H L S V A D L L F V I T L P F W A V D 2 F A L I L V S S Y L N V T Y I V H V A K 3 E K V V Y V G V W I P A L L L T I P D 4 Y C S L I V I G P L I L G V M I H Q F Q F 5 V I L I L A F F A C W L P Y Y I G I S I 6 I P N L C C H F F A L A E T I S I W K 7
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ICL1 K K L R ICL1ECL1 N W Y F ECL1ICL2 A T N S Q R P R ICL2ECL2 N V S E A D D R Y I C D R F Y P N ECL2ICL3 K G H Q ICL3ECL3 I I K Q ECL3N-term M E G I S I Y T S D N Y T E E M G S G D Y D S M K E P C F N-termC-term S V S R G S S L K I L S K G K R G G H S S V S T E S E S S S F H S S C-term R E E N A N F N K I F L P T I Y S I I F L T G I V G N G L V I L V M G Y Q S M T D K Y R L H L S V A D L L F V I T L P F W A V D A V A G N F L C K A V H V I Y T V N L Y S S V L I L A F I S L D R Y L A I V H K L L A E K V V Y V G V W I P A L L L T I P D F I F A D L W V V V F Q F Q H I M V G L I L P G I V I L S C Y C I I I S K L S H S K R K A L K T T V I L I L A F F A C W L P Y Y I G I S I D S F I L L E G C E F E N T V H K W I S I T E A L A F F H C C L N P I L Y A F L G A K A Q H F K T S A L T
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Residue Table


GPCRdb(A)
GPCRdb(A)
CXCR4
ECL2
45x51 45.51x51 D187
45x52 45.52x52 R188
TM5
5x33 5.32x33 D193
5x35 5.34x35 W195
TM6
6x51 6.51x51 Y255
TM7
7x38 7.39x38 E288