PDB
8YNT
Resolution
3.4 Å
Released
Dec. 18, 2024
Receptor
MCH1
Class
A
Species
Homo sapiens
Ligand
CHEMBL242004
Function
Antagonist
Reference
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Ligand Amino Acid Generic Number Segment Interaction Type
CHEMBL242004 F116 1.39x39 TM1 hydrophobic
CHEMBL242004 F161 2.53x53 TM2 hydrophobic
CHEMBL242004 M165 2.57x57 TM2 polar (hydrogen bond)
CHEMBL242004 M168 2.60x60 TM2 hydrophobic
CHEMBL242004 M168 2.60x60 TM2 Van der Waals
CHEMBL242004 I169 2.61x61 TM2 Van der Waals
CHEMBL242004 D192 3.32x32 TM3 Van der Waals
CHEMBL242004 S195 3.35x35 TM3 Van der Waals
CHEMBL242004 Q196 3.36x36 TM3 Van der Waals
CHEMBL242004 F427 6.44x44 TM6 hydrophobic
CHEMBL242004 F427 6.44x44 TM6 Van der Waals
CHEMBL242004 W431 6.48x48 TM6 aromatic (face-to-face)
CHEMBL242004 W431 6.48x48 TM6 Van der Waals
CHEMBL242004 W431 6.48x48 TM6 polar (hydrogen bond)
CHEMBL242004 Y434 6.51x51 TM6 Van der Waals
CHEMBL242004 Y434 6.51x51 TM6 hydrophobic
CHEMBL242004 Y435 6.52x52 TM6 Van der Waals
CHEMBL242004 Y455 7.35x34 TM7 Van der Waals
CHEMBL242004 I459 7.39x38 TM7 Van der Waals
CHEMBL242004 Y463 7.43x42 TM7 Van der Waals
CHEMBL242004 Y463 7.43x42 TM7 hydrophobic

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Snake plot — Download: PNG | SVG
ICL1 K L H W C N ICL1ECL1 N G V W H F ECL1ICL2 P I S S T K F R ICL2ECL2 R L I P F P G G A V G C G I R L P N ECL2ICL3 T S S V A P A S ICL3ECL3 S R P T ECL3N-term M D L E A S L L P T G P N A S N T S D G P D N L T S A G S P P R T G S I N-termC-term P A A Q G Q L R A V S N A Q T A D E E R T E S K G T C-term S Y I N I I M P S V F G T I C L L G I I G N S T V I F A V V K K S N V P D I F I I N L S V V D L L F L L G M P F M I H Q L M G G E T M C T L I T A M D A N S Q F T S T Y I L T A M A I D R Y L A T V H K P S V A T L V I C L L W A L S F I S I T P V W L Y A P D T D L Y W F T L Y Q F F L A F A L P F V V I T A A Y V R I L Q R M Q R S I R L R T K R V T R T A I A I C L V F F V C W A P Y Y V L Q L T Q L S I L T F V Y L Y N A A I S L G Y A N S C L N P F V Y I V L C E T L V L F R K R S V K
Helix box plot — Download: PNG | SVG S N G I I G L L C I T G F V S P M I I N 1 I N L S V V D L L F L L G M P F M I H Q 2 A T L I Y T S T F Q S N A D M A T I L T 3 A T L V I C L L W A L S F I S I T P V 4 Y A A T I V V F P L A F A L F F Q Y L T F 5 I A I C L V F F V C W A P Y Y V L Q L T 6 F P N L C S N A Y G L S I A A N Y L Y 7

GPCRdb(A)
GPCRdb(A)
MCH1 receptor
TM1
1x39 1.39x39 F47
TM2
2x53 2.53x53 F92
2x57 2.57x57 M96
2x60 2.60x60 M99
2x61 2.61x61 I100
TM3
3x32 3.32x32 D123
3x35 3.35x35 S126
3x36 3.36x36 Q127
TM6
6x44 6.44x44 F265
6x48 6.48x48 W269
6x51 6.51x51 Y272
6x52 6.52x52 Y273
TM7
7x34 7.35x34 Y293
7x38 7.39x38 I297
7x42 7.43x42 Y301