PDB
Resolution
2.9 Å
Released
Dec. 11, 2024
Receptor
Class
A
Species
Homo sapiens
Ligand
Function
EP-3945
Agonist
Reference
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Ligand Amino Acid Generic Number Segment Interaction Type
EP-3945 R103 3.30x30 TM3 Van der Waals
EP-3945 Y106 3.33x33 TM3 hydrophobic
EP-3945 Y109 3.36x36 TM3 hydrophobic
EP-3945 T110 3.37x37 TM3 Van der Waals
EP-3945 T160 4.60x60 TM4 hydrophobic
EP-3945 C164 4.64x64 TM4 Van der Waals
EP-3945 F170 ECL2 hydrophobic
EP-3945 C175 5.33x34 TM5 Van der Waals
EP-3945 D179 5.37x38 TM5 polar (hydrogen bond)
EP-3945 Q182 5.40x41 TM5 Van der Waals
EP-3945 A183 5.41x42 TM5 Van der Waals
EP-3945 M187 5.45x46 TM5 Van der Waals
EP-3945 S238 6.52x52 TM6 Van der Waals
EP-3945 W241 6.55x55 TM6 hydrophobic
EP-3945 W241 6.55x55 TM6 aromatic (edge-to-face)
EP-3945 F242 6.56x56 TM6 Van der Waals
EP-3945 Y245 6.59x59 TM6 hydrophobic
EP-3945 Y245 6.59x59 TM6 polar (hydrogen bond)

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Snake plot — Download: PNG | SVG
ICL1 H R ICL1ECL1 P L V N T ECL1ICL2 P I W F K C H R ICL2ECL2 S K F L K F N E D ECL2ICL3 Q Q W R R ICL3ECL3 S L P P E M ECL3N-term M N Q T L N S S G T V E S A L N Y S R G S T V H T N-termC-term L Q Q A L R E E P E L E G G E T P T V G T N E M G A C-term A Y L V L S S L A M F T C L C G M A G N S M V I W L L G F R M N P F C I Y I L N L A A A D L L F L F S M A S T L S L E T Q T D K V H E L M K R L M Y F A Y T V G L S L L T A I S T Q R C L S V L F P R H L S A W V C G L L W T L C L L M N G L T S S F C R C F R V D M V Q A A L I M G V L T P V M T L S S L T L F V W V R R S S Q P T R L F V V V L A S V L V F L I C S L P L S I Y W F V L Y W L Q V L C F S L S R L S S S V S S S A N P V I Y F L V G S R L P T T V R S H R R S L G
Helix box plot — Download: PNG | SVG S N G A M G C L C T F M A L S S L V L Y 1 L N L A A A D L L F L F S M A S T L S L 2 A T L L S L G V T Y A F Y M L R K M L E 3 S A W V C G L L W T L C L L M N G L T S 4 T L S S L T M V P T L V G M I L A A Q V M 5 L A S V L V F L I C S L P L S I Y W F V 6 V P N A S S S V S S S L R S L S F C L 7

GPCRdb(A)
GPCRdb(A)
MRGPRD
TM3
3x30 3.30x30 R103
3x33 3.33x33 Y106
3x36 3.36x36 Y109
3x37 3.37x37 T110
TM4
4x60 4.60x60 T160
4x64 4.64x64 C164
TM5
5x34 5.33x34 C175
5x38 5.37x38 D179
5x41 5.40x41 Q182
5x42 5.41x42 A183
5x46 5.45x46 M187
TM6
6x52 6.52x52 S238
6x55 6.55x55 W241
6x56 6.56x56 F242
6x59 6.59x59 Y245