Structure information

Rhodopsin

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

9EPR

SPECIES

Hasarius adansoni

RESOLUTION

4.900

PREFERRED CHAIN

R

REFERENCE

10.1038/S41467-024-53208-2

PUBLICATION DATE

Oct. 30, 2024

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
Retinal (11-cis) Y218 5.42x43 TM5 hydrophobic
Retinal (11-cis) A219 5.43x44 TM5 hydrophobic
Retinal (11-cis) Y223 5.47x47 TM5 hydrophobic
Retinal (11-cis) W290 6.48x48 TM6 hydrophobic
Retinal (11-cis) Y293 6.51x51 TM6 hydrophobic
Retinal (11-cis) A317 7.39x38 TM7 hydrophobic
Retinal (11-cis) A320 7.42x41 TM7 hydrophobic

Ligands

Retinal (11-cis)

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Residue Diagrams

G N G S V S I I G I V I I L M G L I Y H 1 L N L A L S D F G M L F F M M P T M S I 2 M V L S W I S A S G F L S G I M G Y L E 3 A L L R M L F V W I W S L G W T I A P M 4 Y C Y I I I F L P V F Y V F I A Y A I L Y 5 F M T I C C W F M A W T P Y L T L S F L 6 I P N Y C A S A K A F I A G W V S T M 7
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ICL1 K N L R ICL1ECL1 T W V I ECL1ICL2 G M A G K P L ICL2ECL2 G W S R Y V P E G S M T S C T I D Y I D T ECL2ICL3 I K S L R S ICL3ECL3 D R T W L ECL3N-term M L P H A A K M A A R V A G D H D G R N I S I V D L L P E D M L P M I H E H W Y K F P P M N-termC-term P C L K C G S D S P K G D S A S T V A E S E K A G E C-term E T S M H Y I L G M L I I V I G I I S V S G N G V V M Y L M M T V T P G N F L V L N L A L S D F G M L F F M M P T M S I N C F A E G P F M C E L Y G M I G S L F G S A S I W S L V M I T L D R Y N V I V K T K V G A L L R M L F V W I W S L G W T I A P M Y A I N P M S Y L I A Y A I F V Y F V P L F I I I Y C Y A F I V M Q V A A H E K S L R E Q A K K M N N E D N K K A S A E F R L A K V A F M T I C C W F M A W T P Y L T L S F L G I F S T P M T S V W G A I F A K A S A C Y N P I V Y G I S H P K L H D Y R A A K F
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Residue Table


GPCRdb(A)
GPCRdb(A)
Rhodopsin
TM5
5x43 5.42x43 Y218
5x44 5.43x44 A219
5x47 5.47x47 Y223
TM6
6x48 6.48x48 W290
6x51 6.51x51 Y293
TM7
7x38 7.39x38 A317
7x41 7.42x41 A320