PDB
9GE3
Resolution
2.9 Å
Released
March 5, 2025
Receptor
GPR55
Class
A
Species
Homo sapiens
Ligand
1-palmitoyl-2-lysophosphatidylinositol
Function
Agonist
Reference
—

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Ligand Amino Acid Generic Number Segment Interaction Type
1-palmitoyl-2-lysophosphatidylinositol F12 1.24x24 TM1 hydrophobic
1-palmitoyl-2-lysophosphatidylinositol N16 1.28x28 TM1 Van der Waals
1-palmitoyl-2-lysophosphatidylinositol N16 1.28x28 TM1 polar (hydrogen bond)
1-palmitoyl-2-lysophosphatidylinositol F102 3.33x33 TM3 Van der Waals
1-palmitoyl-2-lysophosphatidylinositol F102 3.33x33 TM3 hydrophobic
1-palmitoyl-2-lysophosphatidylinositol Y106 3.37x37 TM3 hydrophobic
1-palmitoyl-2-lysophosphatidylinositol Y106 3.37x37 TM3 Van der Waals
1-palmitoyl-2-lysophosphatidylinositol G152 4.56x56 TM4 Van der Waals
1-palmitoyl-2-lysophosphatidylinositol S153 4.57x57 TM4 Van der Waals
1-palmitoyl-2-lysophosphatidylinositol I156 4.60x61 TM4 hydrophobic
1-palmitoyl-2-lysophosphatidylinositol I156 4.60x61 TM4 Van der Waals
1-palmitoyl-2-lysophosphatidylinositol Y157 4.61x62 TM4 Van der Waals
1-palmitoyl-2-lysophosphatidylinositol Y157 4.61x62 TM4 hydrophobic
1-palmitoyl-2-lysophosphatidylinositol H170 45.52x52 ECL2 polar (hydrogen bond)
1-palmitoyl-2-lysophosphatidylinositol H170 45.52x52 ECL2 Van der Waals
1-palmitoyl-2-lysophosphatidylinositol N171 ECL2 Van der Waals
1-palmitoyl-2-lysophosphatidylinositol N171 ECL2 polar (hydrogen bond with backbone)
1-palmitoyl-2-lysophosphatidylinositol M172 ECL2 Van der Waals
1-palmitoyl-2-lysophosphatidylinositol M172 ECL2 polar (hydrogen bond with backbone)
1-palmitoyl-2-lysophosphatidylinositol W177 ECL2 polar (hydrogen bond)
1-palmitoyl-2-lysophosphatidylinositol W177 ECL2 Van der Waals
1-palmitoyl-2-lysophosphatidylinositol L185 5.42x43 TM5 Van der Waals
1-palmitoyl-2-lysophosphatidylinositol L185 5.42x43 TM5 hydrophobic
1-palmitoyl-2-lysophosphatidylinositol F246 6.55x55 TM6 Van der Waals
1-palmitoyl-2-lysophosphatidylinositol F246 6.55x55 TM6 hydrophobic
1-palmitoyl-2-lysophosphatidylinositol Q249 6.58x58 TM6 Van der Waals
1-palmitoyl-2-lysophosphatidylinositol R253 6.62x62 TM6 polar (charge-assisted hydrogen bond)
1-palmitoyl-2-lysophosphatidylinositol S267 7.32x31 TM7 Van der Waals
1-palmitoyl-2-lysophosphatidylinositol L270 7.35x34 TM7 hydrophobic
1-palmitoyl-2-lysophosphatidylinositol L270 7.35x34 TM7 Van der Waals
1-palmitoyl-2-lysophosphatidylinositol M274 7.39x38 TM7 Van der Waals

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Snake plot — Download: PNG | SVG
ICL1 W P D Y ICL1ECL1 Q S P ECL1ICL2 P L L V S H L R ICL2ECL2 K Y M C F H N M S D D T W ECL2ICL3 T Q D W V Q ICL3ECL3 F I V ECL3N-term M S Q Q N T S G D C L N-termC-term V Q L V L Q D T T I S R G C-term F D G V N E L M K T L Q F A V H I P T F V L G L L L N L L A I H G F S T F L K N R A A T S I Y M I N L A V F D L L L V L S L P F K M V L S Q V F P S L C T L V E C L Y F V S M Y G S V F T I C F I S M D R F L A I R Y S P R K I F G I C C T I W V L V W T G S I P I Y S F H G K V E S A K V F F P L E V F G F L L P M G I M G F C C S R S I H I L L G R R D H Q K A C I Y S I A A S L A V F V V S F L P V H L G F F L Q F L V R N S E C R A K Q S I S F F L Q L S M C F S N V N C C L D V F C Y Y F V I K E I R A R F R M N H R P S
Helix box plot — Download: PNG | SVG L N L L L G L V F T P I H V A F Q L T K 1 I N L A V F D L L L V L S L P F K M V L 2 F C I T F V S G Y M S V F Y L C E V L T 3 I F G I C C T I W V L V W T G S I P I 4 C C F G M I G M P L L F G F V E L P F F V 5 A A S L A V F V V S F L P V H L G F F L 6 F V D L C C N V N S F C M S L Q L F F 7

GPCRdb(A)
GPCRdb(A)
GPR55
TM1
1x24 1.24x24 F12
1x28 1.28x28 N16
TM3
3x33 3.33x33 F102
3x37 3.37x37 Y106
TM4
4x56 4.56x56 G152
4x57 4.57x57 S153
4x61 4.60x61 I156
4x62 4.61x62 Y157
ECL2
45x52 45.52x52 H170
TM5
5x43 5.42x43 L185
TM6
6x55 6.55x55 F246
6x58 6.58x58 Q249
6x62 6.62x62 R253
TM7
7x31 7.32x31 S267
7x34 7.35x34 L270
7x38 7.39x38 M274