PDB
Resolution
3.2 Å
Released
April 2, 2025
Receptor
Class
A
Species
Homo sapiens
Ligand
LTD4
Function
Agonist

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file
Download list in excel
Ligand Amino Acid Generic Number Segment Interaction Type
LTD4 K37 1.31x31 TM1 polar (charge-assisted hydrogen bond)
LTD4 S115 3.29x29 TM3 polar (hydrogen bond)
LTD4 Y119 3.33x33 TM3 polar (hydrogen bond)
LTD4 Y123 3.37x37 TM3 polar (hydrogen bond)
LTD4 I166 4.53x53 TM4 Van der Waals
LTD4 S169 4.56x56 TM4 polar (hydrogen bond)
LTD4 S170 4.57x57 TM4 Van der Waals
LTD4 L173 4.60x61 TM4 Van der Waals
LTD4 L173 4.60x61 TM4 hydrophobic
LTD4 L188 45.51x51 ECL2 Van der Waals
LTD4 L188 45.51x51 ECL2 polar (hydrogen bond with backbone)
LTD4 E189 45.52x52 ECL2 polar (hydrogen bond with backbone)
LTD4 E189 45.52x52 ECL2 Van der Waals
LTD4 L198 5.35x36 TM5 hydrophobic
LTD4 L198 5.35x36 TM5 Van der Waals
LTD4 M201 5.38x39 TM5 polar (hydrogen bond with backbone)
LTD4 M201 5.38x39 TM5 Van der Waals
LTD4 I204 5.41x42 TM5 Van der Waals
LTD4 A205 5.42x43 TM5 Van der Waals
LTD4 V208 5.45x46 TM5 Van der Waals
LTD4 R267 6.55x55 TM6 polar (charge-assisted hydrogen bond)
LTD4 L271 6.59x59 TM6 Van der Waals
LTD4 H284 7.32x31 TM7 polar (hydrogen bond)
LTD4 H284 7.32x31 TM7 Van der Waals
LTD4 L287 7.35x34 TM7 Van der Waals
LTD4 L287 7.35x34 TM7 hydrophobic

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

Snake plot — Download: PNG | SVG
ICL1 Y K K S ICL1ECL1 S N W I F ECL1ICL2 P F R L L H V T ICL2ECL2 G S E Q N G S V T S C L E L N L Y K ECL2ICL3 E V P E ICL3ECL3 K V G L C ECL3N-term M E R K F M S L Q P S I S V S E M E P N G T F S N N N S R N N-termC-term G H P Q K A K T K C V F P V S V W L R K E T R V C-term C T I E N F K R E F F P I V Y L I I F F W G V L G N G L S I Y V F L Q P T S V N V F M L N L A I S D L L F I S T L P F R A D Y Y L R G G D L A C R I M S Y S L Y V N M Y S S I Y F L T V L S V V R F L A M V H S I R S A W I L C G I I W I L I M A S S I M L L D S I A K L Q T M N Y I A L V V G C L L P F F T L S I C Y L L I I R V L L K V S G L R V S H R K A L T T I I I T L I I F F L C F L P Y H T L R T V H L T T W K D R L H K A L V I T L A L A A A N A C F N P L L Y Y F A G E N L K S F K D R A L R K
Helix box plot — Download: PNG | SVG G N G L V G W F F I I L Y V I P F F E R 1 L N L A I S D L L F I S T L P F R A D Y 2 V T L F Y I S S Y M N V Y L S Y S M I R 3 A W I L C G I I W I L I M A S S I M L 4 Y C I S L T F F P L L C G V V L A I Y N M 5 I I I T L I I F L F C F L P Y H T L R T V 6 L P N F C A N A A A L A L T I V L A K 7

GPCRdb(A)
GPCRdb(A)
CysLT2 receptor
TM1
1x31 1.31x31 K37
TM3
3x29 3.29x29 S115
3x33 3.33x33 Y119
3x37 3.37x37 Y123
TM4
4x53 4.53x53 I166
4x56 4.56x56 S169
4x57 4.57x57 S170
4x61 4.60x61 L173
ECL2
45x51 45.51x51 L188
45x52 45.52x52 E189
TM5
5x36 5.35x36 L198
5x39 5.38x39 M201
5x42 5.41x42 I204
5x43 5.42x43 A205
5x46 5.45x46 V208
TM6
6x55 6.55x55 R267
6x59 6.59x59 L271
TM7
7x31 7.32x31 H284
7x34 7.35x34 L287