PDB
9K26
Resolution
3.0 Å
Released
Jan. 29, 2025
Receptor
PrRP
Class
A
Species
Homo sapiens
Ligand
PrRP31
Function
Agonist
Reference
—

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Ligand Amino Acid Generic Number Segment Interaction Type
PrRP31 L53 N-term hydrophobic
PrRP31 Q54 N-term Van der Waals
PrRP31 Q54 N-term polar (hydrogen bond)
PrRP31 C113 2.57x56 TM2 Van der Waals
PrRP31 T117 2.61x60 TM2 polar (hydrogen bond)
PrRP31 T117 2.61x60 TM2 polar (hydrogen bond)
PrRP31 Y120 2.64x63 TM2 polar (hydrogen bond with backbone)
PrRP31 Y120 2.64x63 TM2 Van der Waals
PrRP31 F138 3.29x29 TM3 Van der Waals
PrRP31 Q141 3.32x32 TM3 polar (hydrogen bond)
PrRP31 Q141 3.32x32 TM3 polar (hydrogen bond)
PrRP31 P142 3.33x33 TM3 hydrophobic
PrRP31 V145 3.36x36 TM3 Van der Waals
PrRP31 V145 3.36x36 TM3 hydrophobic
PrRP31 Y146 3.37x37 TM3 Van der Waals
PrRP31 Y146 3.37x37 TM3 hydrophobic
PrRP31 V201 ECL2 Van der Waals
PrRP31 L203 ECL2 Van der Waals
PrRP31 L210 ECL2 Van der Waals
PrRP31 L210 ECL2 hydrophobic
PrRP31 E212 45.51x51 ECL2 polar (charge-assisted hydrogen bond)
PrRP31 F214 ECL2 Van der Waals
PrRP31 F214 ECL2 hydrophobic
PrRP31 Y225 5.38x39 TM5 Van der Waals
PrRP31 L229 5.42x43 TM5 Van der Waals
PrRP31 L294 6.51x51 TM6 hydrophobic
PrRP31 L294 6.51x51 TM6 Van der Waals
PrRP31 H295 6.52x52 TM6 Van der Waals
PrRP31 N298 6.55x55 TM6 Van der Waals
PrRP31 R301 6.58x58 TM6 polar (charge-assisted hydrogen bond)
PrRP31 D302 6.59x59 TM6 polar (charge-assisted hydrogen bond)
PrRP31 H306 ECL3 Van der Waals
PrRP31 P310 7.28x27 TM7 hydrophobic
PrRP31 P310 7.28x27 TM7 Van der Waals
PrRP31 F313 7.31x30 TM7 hydrophobic
PrRP31 F313 7.31x30 TM7 Van der Waals
PrRP31 Q317 7.35x34 TM7 polar (hydrogen bond)
PrRP31 Q317 7.35x34 TM7 Van der Waals
PrRP31 H321 7.39x38 TM7 polar (hydrogen bond)
PrRP31 H321 7.39x38 TM7 Van der Waals

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Snake plot — Download: PNG | SVG
ICL1 R R L H ICL1ECL1 R G W V F ECL1ICL2 P L R R R I ICL2ECL2 Y H V E L K P H D V R L C E E F W G S Q ECL2ICL3 V T Q S Q ICL3ECL3 P H A I ECL3N-term M A S S T T R G P R V S D L F S G L P P A V T T P A N Q S A E A S A G N G S V A G A D A P A V T P F Q S L Q L V H Q N-termC-term K I A P H G Q N M T V S V V I C-term L K G L I V L L Y S V V V V V G L V G N C L L V L V I A R V N V T N F L I G N L A L S D V L M C T A C V P L T L A Y A F E P G G G L C H L V F F L Q P V T V Y V S V F T L T T I A V D R Y V V L V H S L R L S A Y A V L A I W A L S A V L A L P A A V H T E R Q R Q L Y A W G L L L V T Y L L P L L V I L L S Y V R V S V K L R N R V V P G C A D W D R A R R R R T F C L L V V I V V V F A V C W L P L H V F N L L R D L D D P Y A F G L V Q L L C H W L A M S S A C Y N P F I Y A W L H D S L R K W P R F R E E L L V A
Helix box plot — Download: PNG | SVG C N G V L G V V V V V S Y L L V I L G K 1 G N L A L S D V L M C A T C V P L T L A Y 2 T T L T F V S V Y V T V P Q L F F V L H 3 S A Y A V L A I W A L S A V L A L P A 4 Y S L L I V L L P L L Y T V L L L G W A Y 5 V V I V V V F A V C W L P L H V F N L L 6 F P N Y C A S S M A L W H C L L Q V L 7

GPCRdb(A)
GPCRdb(A)
PrRP receptor
TM2
2x56 2.57x56 C113
2x60 2.61x60 T117
2x63 2.64x63 Y120
TM3
3x29 3.29x29 F138
3x32 3.32x32 Q141
3x33 3.33x33 P142
3x36 3.36x36 V145
3x37 3.37x37 Y146
ECL2
45x51 45.51x51 E212
TM5
5x39 5.38x39 Y225
5x43 5.42x43 L229
TM6
6x51 6.51x51 L294
6x52 6.52x52 H295
6x55 6.55x55 N298
6x58 6.58x58 R301
6x59 6.59x59 D302
TM7
7x27 7.28x27 P310
7x30 7.31x30 F313
7x34 7.35x34 Q317
7x38 7.39x38 H321