PDB
9L3W
Resolution
3.5 Å
Released
March 12, 2025
Receptor
chemerin
Class
A
Species
Homo sapiens
Ligand
Chemerin
Function
Agonist
Reference
10.1093/PROCEL/PWAE073

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Ligand Amino Acid Generic Number Segment Interaction Type
Chemerin Y103 ECL1 aromatic (edge-to-face)
Chemerin N116 3.29x29 TM3 polar (hydrogen bond)
Chemerin N116 3.29x29 TM3 Van der Waals
Chemerin I120 3.33x33 TM3 Van der Waals
Chemerin I120 3.33x33 TM3 hydrophobic
Chemerin M123 3.36x36 TM3 hydrophobic
Chemerin M123 3.36x36 TM3 Van der Waals
Chemerin R178 ECL2 polar (charge-assisted hydrogen bond)
Chemerin A181 ECL2 Van der Waals
Chemerin L183 ECL2 Van der Waals
Chemerin L183 ECL2 hydrophobic
Chemerin H184 ECL2 Van der Waals
Chemerin F190 45.51x51 ECL2 Van der Waals
Chemerin F190 45.51x51 ECL2 hydrophobic
Chemerin N191 45.52x52 ECL2 polar (hydrogen bond with backbone)
Chemerin N191 45.52x52 ECL2 polar (hydrogen bond)
Chemerin N191 45.52x52 ECL2 Van der Waals
Chemerin R224 5.42x43 TM5 Van der Waals
Chemerin Y276 6.51x51 TM6 Van der Waals
Chemerin Y276 6.51x51 TM6 aromatic (face-to-face)
Chemerin E283 6.58x58 TM6 polar (charge-assisted hydrogen bond)
Chemerin H286 6.61x61 TM6 polar (hydrogen bond with backbone)
Chemerin H286 6.61x61 TM6 Van der Waals
Chemerin M289 ECL3 Van der Waals
Chemerin P290 ECL3 Van der Waals
Chemerin G291 7.28x27 TM7 Van der Waals
Chemerin G291 7.28x27 TM7 polar (hydrogen bond with backbone)
Chemerin F294 7.31x30 TM7 Van der Waals
Chemerin F294 7.31x30 TM7 hydrophobic
Chemerin S295 7.32x31 TM7 Van der Waals
Chemerin L298 7.35x34 TM7 hydrophobic
Chemerin L298 7.35x34 TM7 Van der Waals
Chemerin T302 7.39x38 TM7 Van der Waals

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Snake plot — Download: PNG | SVG
ICL1 M K K ICL1ECL1 Y H W V F ECL1ICL2 P V W S Q N H R ICL2ECL2 D T A N L H G K I S C F N N F S L S T P G S S S W P ECL2ICL3 L A K T ICL3ECL3 T A M ECL3N-term M R M E D E D Y N T S I S Y G D E Y P D Y L D S I V V L E D L S N-termC-term S R L V N A L S E D T G H S S Y P S H R S F T K M S S M N E R T S M N E R E T G M L C-term P L E A R V T R I F L V V V Y S I V C F L G I L G N G L V I I I A T F K T V N M V W F L N L A V A D F L F N V F L P I H I T Y A A M D G T A M C K I S N F L L I H N M F T S V F L L T I I S S D R C I S V L L S V R L A Y M A C M V I W V L A F F L S S P S L V F R T H S Q M D P V G Y S R H M V V T V T R F L C G F L V P V L I I T A C Y L T I V C K L Q R N R K K P F K I I V T I I I T F F L C W C P Y H T L N L L E L H H P G S V F S L G L P L A T A L A I A N S C M N P I L Y V F M G Q D K V A F K K F L F
Helix box plot — Download: PNG | SVG G N G L I G L F C V I S Y V V V L F I R 1 L N L A V A D F L F N V F L P I H I T Y 2 I T L L F V S T F M N H I L L F N S I K 3 A Y M A C M V I W V L A F F L S S P S 4 Y C A T I I L V P V L F G C L F R T V T V 5 V T I I I T F F L C W C P Y H T L N L L 6 I P N M C S N A I A L A T A L P L G L 7

GPCRdb(A)
GPCRdb(A)
chemerin receptor
TM3
3x29 3.29x29 N116
3x33 3.33x33 I120
3x36 3.36x36 M123
ECL2
45x51 45.51x51 F190
45x52 45.52x52 N191
TM5
5x43 5.42x43 R224
TM6
6x51 6.51x51 Y276
6x58 6.58x58 E283
6x61 6.61x61 H286
TM7
7x27 7.28x27 G291
7x30 7.31x30 F294
7x31 7.32x31 S295
7x34 7.35x34 L298
7x38 7.39x38 T302