PDB
9M40
Resolution
2.7 Å
Released
March 11, 2026
Receptor
taar13e
Class
A
Species
Danio rerio
Ligand
Function
Agmatine
Agonist
Reference
—

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Ligand Amino Acid Generic Number Segment Interaction Type
Agmatine D112 3.32x32 TM3 polar (hydrogen bond)
Agmatine D112 3.32x32 TM3 polar (charge-charge)
Agmatine M113 3.33x33 TM3 hydrophobic
Agmatine T116 3.36x36 TM3 polar (hydrogen bond)
Agmatine S117 3.37x37 TM3 polar (hydrogen bond)
Agmatine Y163 4.56x56 TM4 Van der Waals
Agmatine L192 45.52x52 ECL2 hydrophobic
Agmatine F194 ECL2 Van der Waals
Agmatine D202 5.42x43 TM5 polar (hydrogen bond)
Agmatine D202 5.42x43 TM5 polar (charge-charge)
Agmatine A206 5.46x461 TM5 Van der Waals
Agmatine W269 6.48x48 TM6 aromatic (pi-cation)
Agmatine F272 6.51x51 TM6 hydrophobic
Agmatine F272 6.51x51 TM6 aromatic (pi-cation)
Agmatine F273 6.52x52 TM6 Van der Waals
Agmatine Y299 7.43x42 TM7 Van der Waals

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Snake plot — Download: PNG | SVG
ICL1 K Q L Q ICL1ECL1 C W Y Y ECL1ICL2 P L Q Y P T M I ICL2ECL2 K A N V E G L E E Y I E S I Y C M G G C T L L F ECL2ICL3 N Q H D ICL3ECL3 F S T ECL3N-term M D L S A Q E Y D A S Q F C F P A V N N S C L K G T H N-termC-term L R M F E P N S S D I N V F T V C-term H V S T Q T V V Y L V L A S A M T V T I L G N S V V I I S I A H F T P T N I L V M S L A L A D L L L G L V V M P F S M I R S V D G G E T F C L L H S S F D M F L T S V S I F H L I F I A V D R H Q A V C F T I P V A W V M V I I S W S M A A F Y S Y G L V Y S N A L W G A I D T L V A F F L P C F V M I G L Y A R I F M I A K K H A R K L G E A N E N L F K S S R R S E R K A A K T L G I V V G A F V I C W L P F F I N S M M D P Y I N P G V L F E A F V W L G Y M N S A I N P I I Y G L F Y P W F Y L I R K T L I T
Helix box plot — Download: PNG | SVG S N G L I T V T M A S A L V L Y V V T Q 1 M S L A L A D L L L G V L V M P F S M I R 2 F I L H F I S V S T L F M D F S S H L L 3 A W V M V I I S W S M A A F Y S Y G L V 4 Y L G I M V F C P L F F A V L T D I A G W 5 G I V V G A F V I C W L P F F I N S M M 6 I P N I A S N M Y G L W V F A E F L V 7

GPCRdb(A)
GPCRdb(A)
taar13e
TM3
3x32 3.32x32 D112
3x33 3.33x33 M113
3x36 3.36x36 T116
3x37 3.37x37 S117
TM4
4x56 4.56x56 Y163
ECL2
45x52 45.52x52 L192
TM5
5x43 5.42x43 D202
5x461 5.46x461 A206
TM6
6x48 6.48x48 W269
6x51 6.51x51 F272
6x52 6.52x52 F273
TM7
7x42 7.43x42 Y299