PDB
9ODJ
Resolution
3.0 Å
Released
Jan. 7, 2026
Receptor
μ
Class
A
Species
Mus musculus
Ligand
Mitragynine pseudoindoxyl
Function
Agonist (partial)
Reference
10.1038/S41586-025-10056-4

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file
Download list in excel
Ligand Amino Acid Generic Number Segment Interaction Type
Mitragynine pseudoindoxyl Y75 1.39x39 TM1 hydrophobic
Mitragynine pseudoindoxyl D147 3.32x32 TM3 polar (charge-assisted hydrogen bond)
Mitragynine pseudoindoxyl Y148 3.33x33 TM3 Van der Waals
Mitragynine pseudoindoxyl Y148 3.33x33 TM3 hydrophobic
Mitragynine pseudoindoxyl M151 3.36x36 TM3 Van der Waals
Mitragynine pseudoindoxyl I296 6.51x51 TM6 hydrophobic
Mitragynine pseudoindoxyl I296 6.51x51 TM6 Van der Waals
Mitragynine pseudoindoxyl H297 6.52x52 TM6 Van der Waals
Mitragynine pseudoindoxyl H319 7.36x35 TM7 Van der Waals
Mitragynine pseudoindoxyl I322 7.39x38 TM7 hydrophobic
Mitragynine pseudoindoxyl I322 7.39x38 TM7 Van der Waals
Mitragynine pseudoindoxyl Y326 7.43x42 TM7 Van der Waals
Mitragynine pseudoindoxyl Y326 7.43x42 TM7 hydrophobic

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

Snake plot — Download: PNG | SVG
ICL1 T K M K ICL1ECL1 T W P F ECL1ICL2 P V K A L D F R ICL2ECL2 T T K Y R Q G S I D C T L T F S H ECL2ICL3 R M L S G ICL3ECL3 T I P E ECL3N-term M D S S A G P G N I S D C S D P L A P A S C S P A P G S W L N L S H V D G N Q S D P C G P N R T G L G G S H S L C P Q T G S P S N-termC-term P T S S T I E Q Q N S A R I R Q N T R E H P S T A N T V D R T N H Q L E N L E A E T A P L P C-term M V T A I T I M A L Y S I V C V V G L F G N F L V M Y V I V R Y T A T N I Y I F N L A L A D A L A T S T L P F Q S V N Y L M G G N I L C K I V I S I D Y Y N M F T S I F T L C T M S V D R Y I A V C H T P R N A K I V N V C N W I L S S A I G L P V M F M A P T W Y W E N L L K I C V F I F A F I M P V L I I T V C Y G L M I L R L K S V S K E K D R N L R R I T R M V L V V V A V F I V C W T P I H I Y V I I K A L I T T F Q T V S W H F C I A L G Y T N S C L N P V L Y A F L D E N F R E F K R C F C I
Helix box plot — Download: PNG | SVG F N G F L G V V C V I S Y L A M I T I A 1 F N L A L A D A L A T S T L P F Q S V N 2 T C L T F I S T F M N Y Y D I S I V I K 3 A K I V N V C N W I L S S A I G L P V M 4 Y C V T I I L V P M I F A F I F V C I K L 5 L V V V A V F I V C W T P I H I Y V I I 6 V P N L C S N T Y G L A I C F H W S V 7

GPCRdb(A)
GPCRdb(A)
μ receptor
TM1
1x39 1.39x39 Y75
TM3
3x32 3.32x32 D147
3x33 3.33x33 Y148
3x36 3.36x36 M151
TM6
6x51 6.51x51 I296
6x52 6.52x52 H297
TM7
7x35 7.36x35 H319
7x38 7.39x38 I322
7x42 7.43x42 Y326