PDB
9W45
Resolution
3.2 Å
Released
March 4, 2026
Receptor
OR1D2
Class
O2
Species
Mus musculus
Ligand
Methyl cinnamate
Function
Agonist
Reference
—

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file
Download list in excel
Ligand Amino Acid Generic Number Segment Interaction Type
Methyl cinnamate V108 3.36x36 TM3 hydrophobic
Methyl cinnamate F207 5.47x47 TM5 aromatic (face-to-edge)
Methyl cinnamate L255 6.51x51 TM6 hydrophobic
Methyl cinnamate Y259 6.55x55 TM6 polar (hydrogen bond)
Methyl cinnamate Y259 6.55x55 TM6 Van der Waals
Methyl cinnamate L260 6.56x56 TM6 Van der Waals
Methyl cinnamate L260 6.56x56 TM6 hydrophobic
Methyl cinnamate Y277 7.41x40 TM7 Van der Waals

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

Snake plot — Download: PNG | SVG
ICL1 S H L H ICL1ECL1 Q N K A I ECL1ICL2 P L H Y T T A M ICL2ECL2 R V T F C G S R K I H Y I F C E M Y V L L R L A C S N ECL2ICL3 I P ICL3ECL3 K P L H T Y ECL3N-term M D G G N Q S G D S E F L L L G L S E N-term V P E H Q R I L F W T F L S M Y L V T V V G N V L I I L A I G S D T P M Y F F L A N L S F T D L F F V T N T I P K M L V S L Q S S Y P G C L T Q L F F L V S L V A L D N L I L A V M A Y D R Y V A I C H S P K L C I L L L I L C W A L S I L Y G L I H T L L M T T H I N H M M L I A T G C F V F L V P F G F M I M S Y I C I V R A I L K S A S N K Y K A F S T C A S H L A V V A L F Y G T L C M V Y L S M K D S V A T V M Y A V V T P M M N P F I Y S L R N K D L G R P L Q M H G A L L R K K L T
Helix box plot — Download: PNG | SVG V N G V V T V L Y M S L F T W F L I R Q 1 A N L S F T D L F F V T N T I P K M L V 2 V A L I L N D L A V L S V L F F L Q T L 3 C I L L L I L C W A L S I L Y G L I H T 4 Y S M I M F G F P V L F V F C G T A I L 5 A S H L A V V A L F Y G T L C M V Y L 6 F P N M M P T V V A Y M V T A V S D K 7

GPCRdb(A)
GPCRdb(A)
OR1D2
TM3
3x36 3.36x36 V108
TM5
5x47 5.47x47 F207
TM6
6x51 6.51x51 L255
6x55 6.55x55 Y259
6x56 6.56x56 L260
TM7
7x40 7.41x40 Y277