GPCR CLASS (FAMILY)

Class B1 (Secretin)

GPCR SPECIES

Homo sapiens

GPCR PREFERRED CHAIN

R

G PROTEIN (FAMILY)

Gs

G PROTEIN SPECIES

Homo sapiens

PDB CODE

RESOLUTION

2.3 Å

REFERENCE

PUBLICATION DATE

Aug. 12, 2020

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.

LIGAND INTERACTIONS

LIGANDS

SECRETIN - Agonist chembl_ligand pubchem

PHYSIOLOGICAL LIGANDS

VIP, secretin



GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

, , , GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type
GPCR
Segment

AA

Number
Generic
number

segment

AA

Number
Generic
number
Hydrophobic TM6 R 339 6x37 G.H5 L 394 G.H5.26
Hydrophobic TM2 H 178 2x50 G.H5 Y 391 G.H5.23
Aromatic ICL2 F 248 - G.S1 H 41 G.S1.02
Hydrophobic ICL2 F 248 - G.S1 H 41 G.S1.02
Van-der-waals ICL2 F 248 - G.S1 H 41 G.S1.02
Polar TM3 A 245 3x59 G.H5 R 380 G.H5.12
Van-der-waals TM3 A 245 3x59 G.H5 R 380 G.H5.12
Hydrophobic ICL2 F 248 - G.H5 R 380 G.H5.12
Van-der-waals ICL2 F 248 - G.H5 R 380 G.H5.12
Hydrophobic TM3 L 243 3x57 G.H5 H 387 G.H5.19
Hydrophobic TM3 L 243 3x57 G.H5 Y 391 G.H5.23
Hydrophobic ICL2 F 248 - G.S3 F 219 G.S3.03
Polar TM2 R 174 2x46 G.H5 Q 390 G.H5.22
Hydrophobic TM2 R 174 2x46 G.H5 Q 390 G.H5.22
Polar ICL3 Q 327 - G.H5 R 385 G.H5.17
Van-der-waals ICL3 Q 327 - G.H5 R 385 G.H5.17
Polar TM3 L 244 3x58 G.H5 R 380 G.H5.12
Hydrophobic TM3 L 244 3x58 G.H5 H 387 G.H5.19
Polar TM5 K 323 5x64 G.H5 R 385 G.H5.17
Hydrophobic TM5 K 323 5x64 G.H5 R 385 G.H5.17
Aromatic TM2 R 174 2x46 G.H5 Y 391 G.H5.23
Hydrophobic TM2 R 174 2x46 G.H5 Y 391 G.H5.23
Van-der-waals TM2 R 174 2x46 G.H5 Y 391 G.H5.23
Hydrophobic ICL2 F 248 - G.H5 C 379 G.H5.11
Van-der-waals ICL2 F 248 - G.H5 C 379 G.H5.11
Hydrophobic TM5 L 320 5x61 G.H5 L 388 G.H5.20
Polar TM6 R 339 6x37 G.H5 L 393 G.H5.25
Hydrophobic ICL2 F 248 - G.H5 I 383 G.H5.15
Hydrophobic TM6 L 347 6x45 G.H5 L 393 G.H5.25
Hydrophobic ICL2 S 247 - G.H5 F 376 G.H5.08
Hydrophobic ICL3 T 329 - G.h4s6 T 350 G.h4s6.03
Ionic TM5 K 323 5x64 G.H5 D 381 G.H5.13
Polar TM5 K 323 5x64 G.H5 D 381 G.H5.13
Hydrophobic TM5 K 323 5x64 G.H5 D 381 G.H5.13
Van-der-waals TM5 K 323 5x64 G.H5 D 381 G.H5.13
Hydrophobic TM3 Y 239 3x53 G.H5 Y 391 G.H5.23
Van-der-waals TM3 Y 239 3x53 G.H5 Y 391 G.H5.23
Hydrophobic TM5 L 320 5x61 G.H5 L 394 G.H5.26
Hydrophobic TM3 L 240 3x54 G.H5 Y 391 G.H5.23
Polar ICL2 S 247 - G.H5 R 380 G.H5.12
Hydrophobic ICL2 S 247 - G.H5 R 380 G.H5.12
Van-der-waals ICL2 S 247 - G.H5 R 380 G.H5.12
Hydrophobic TM3 L 240 3x54 G.H5 L 393 G.H5.25
Van-der-waals TM3 L 240 3x54 G.H5 L 393 G.H5.25
Aromatic ICL2 F 248 - G.H5 F 376 G.H5.08
Hydrophobic ICL2 F 248 - G.H5 F 376 G.H5.08
Van-der-waals ICL2 F 248 - G.H5 F 376 G.H5.08
Hydrophobic H8 N 392 8x47 G.H5 E 392 G.H5.24
Van-der-waals H8 N 392 8x47 G.H5 E 392 G.H5.24
Hydrophobic TM3 L 244 3x58 G.H5 L 388 G.H5.20
Polar ICL2 S 250 - G.H5 H 387 G.H5.19
Hydrophobic ICL2 S 250 - G.H5 H 387 G.H5.19
Van-der-waals ICL2 S 250 - G.H5 H 387 G.H5.19
Polar H8 G 393 8x48 G.H5 E 392 G.H5.24
Van-der-waals H8 G 393 8x48 G.H5 E 392 G.H5.24
Polar TM5 K 323 5x64 G.H5 Q 384 G.H5.16
Hydrophobic TM5 K 323 5x64 G.H5 Q 384 G.H5.16
Van-der-waals TM5 K 323 5x64 G.H5 Q 384 G.H5.16
Polar TM3 L 244 3x58 G.H5 Q 384 G.H5.16
Hydrophobic TM3 L 244 3x58 G.H5 Q 384 G.H5.16
Van-der-waals TM3 L 244 3x58 G.H5 Q 384 G.H5.16
Hydrophobic ICL2 F 248 - G.S3 V 217 G.S3.01
Polar TM6 R 339 6x37 G.H5 E 392 G.H5.24
Van-der-waals TM6 R 339 6x37 G.H5 E 392 G.H5.24
Polar TM6 S 343 6x41 G.H5 L 393 G.H5.25
Hydrophobic TM6 S 343 6x41 G.H5 L 393 G.H5.25
Van-der-waals TM6 S 343 6x41 G.H5 L 393 G.H5.25
Hydrophobic TM5 K 323 5x64 G.H5 L 388 G.H5.20
Polar TM5 T 326 5x67 G.H5 R 385 G.H5.17
Van-der-waals TM5 T 326 5x67 G.H5 R 385 G.H5.17
Ionic TM6 R 342 6x40 G.H5 E 392 G.H5.24
Polar TM6 R 342 6x40 G.H5 E 392 G.H5.24
Van-der-waals TM6 R 342 6x40 G.H5 E 392 G.H5.24