MRGPRX2 - Gi1

GPCR CLASS (FAMILY)

Class A (Rhodopsin)

GPCR SPECIES

Homo sapiens

GPCR PREFERRED CHAIN

R

G PROTEIN (FAMILY)

Gi/o

G PROTEIN SPECIES

Homo sapiens

PDB CODE

7VDM

RESOLUTION

3.0 Å

REFERENCE

10.1038/S41586-021-04077-Y

PUBLICATION DATE

Dec. 1, 2021

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.

LIGAND INTERACTIONS

20 interactions (Click to see)

LIGANDS

substance P - Agonist pubchem gtoplig chembl_ligand gtoplig gtoplig

PHYSIOLOGICAL LIGANDS

PAMP-20



GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic ICL2 I 135 34x51 G.H5 I 343 G.H5.15
Hydrophobic ICL2 P 134 34x50 G.H5 I 343 G.H5.15
Ionic ICL2 R 143 - G.HN E 28 G.HN.52
Polar ICL2 R 143 - G.HN E 28 G.HN.52
Hydrophobic ICL2 R 143 - G.HN E 28 G.HN.52
Van-der-waals ICL2 R 143 - G.HN E 28 G.HN.52
Polar ICL2 C 139 34x55 G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 C 139 34x55 G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 C 139 34x55 G.hns1 R 32 G.hns1.03
Hydrophobic TM6 P 217 6x29 G.H5 K 345 G.H5.17
Hydrophobic ICL2 I 135 34x51 G.S3 L 194 G.S3.01
Hydrophobic ICL2 R 138 34x54 G.H5 I 343 G.H5.15
Hydrophobic ICL3 L 216 - G.H5 K 345 G.H5.17
Ionic ICL2 R 140 34x56 G.s2s3 D 193 G.s2s3.02
Van-der-waals ICL2 R 140 34x56 G.s2s3 D 193 G.s2s3.02
Polar ICL2 R 138 34x54 G.hns1 A 31 G.hns1.02
Hydrophobic TM2 F 64 2x39 G.H5 C 351 G.H5.23
Hydrophobic ICL2 C 139 34x55 G.S3 L 194 G.S3.01
Van-der-waals ICL2 C 139 34x55 G.S3 L 194 G.S3.01
Polar ICL3 R 214 - G.S6 I 319 G.S6.01
Polar ICL3 R 214 - G.S6 Y 320 G.S6.02
Aromatic ICL3 R 214 - G.S6 Y 320 G.S6.02
Hydrophobic ICL3 R 214 - G.S6 Y 320 G.S6.02
Van-der-waals ICL3 R 214 - G.S6 Y 320 G.S6.02
Polar ICL2 R 138 34x54 G.S1 E 33 G.S1.01
Van-der-waals ICL2 R 138 34x54 G.S1 E 33 G.S1.01
Polar TM3 R 127 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 127 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 127 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM6 L 221 6x33 G.H5 L 348 G.H5.20
Hydrophobic ICL3 L 216 - G.H5 L 348 G.H5.20
Hydrophobic TM3 R 127 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 127 3x50 G.H5 L 353 G.H5.25
Hydrophobic TM7 G 283 7x57 G.H5 F 354 G.H5.26
Van-der-waals TM7 G 283 7x57 G.H5 F 354 G.H5.26
Hydrophobic ICL2 P 134 34x50 G.H5 T 340 G.H5.12
Hydrophobic ICL2 I 135 34x51 G.H5 T 340 G.H5.12
Hydrophobic ICL3 G 215 - G.H5 K 345 G.H5.17
Ionic ICL3 R 214 - G.h4s6 E 318 G.h4s6.12
Polar ICL3 R 214 - G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL3 R 214 - G.h4s6 E 318 G.h4s6.12
Van-der-waals ICL3 R 214 - G.h4s6 E 318 G.h4s6.12
Hydrophobic TM3 S 130 3x53 G.H5 C 351 G.H5.23
Polar ICL2 P 134 34x50 G.H5 N 347 G.H5.19
Van-der-waals ICL2 P 134 34x50 G.H5 N 347 G.H5.19
Hydrophobic ICL3 G 215 - G.h4s6 E 318 G.h4s6.12
Hydrophobic TM2 F 64 2x39 G.H5 D 350 G.H5.22
Van-der-waals TM2 F 64 2x39 G.H5 D 350 G.H5.22
Hydrophobic TM3 V 131 3x54 G.H5 I 344 G.H5.16
Hydrophobic ICL2 Y 137 34x53 G.H5 N 347 G.H5.19
Hydrophobic ICL3 L 216 - G.H5 I 344 G.H5.16
Polar ICL2 R 138 34x54 G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 R 138 34x54 G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 P 134 34x50 G.H5 I 344 G.H5.16
Van-der-waals ICL2 P 134 34x50 G.H5 I 344 G.H5.16
Hydrophobic ICL2 I 135 34x51 G.H5 F 336 G.H5.08
Hydrophobic TM6 L 221 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 R 220 6x32 G.H5 F 354 G.H5.26
Polar TM3 S 130 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 S 130 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 S 130 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 V 131 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 V 131 3x54 G.H5 L 348 G.H5.20
Polar ICL2 Y 137 34x53 G.H5 C 351 G.H5.23
Hydrophobic ICL2 Y 137 34x53 G.H5 C 351 G.H5.23
Van-der-waals ICL2 Y 137 34x53 G.H5 C 351 G.H5.23