PAC1 receptor - Gs

GPCR CLASS (FAMILY)

Class B1 (Secretin)

GPCR SPECIES

Homo sapiens

GPCR PREFERRED CHAIN

R

G PROTEIN (FAMILY)

Gs

G PROTEIN SPECIES

Homo sapiens

PDB CODE

RESOLUTION

2.3 Å

REFERENCE

PUBLICATION DATE

Nov. 23, 2022

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.

LIGAND INTERACTIONS

LIGANDS

[Ac-His1]PACAP-27 - Agonist gtoplig chembl_ligand pubchem

ENDOGENOUS LIGANDS

VIP, PHI, PHM, PHV, PACAP-27, PACAP-38



GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

, , , GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type
GPCR
Segment

AA

Number
Generic
number

segment

AA

Number
Generic
number
Ionic TM5 K 334 5x64 G.H5 D 381 G.H5.13
Polar TM5 K 334 5x64 G.H5 D 381 G.H5.13
Hydrophobic TM5 K 334 5x64 G.H5 D 381 G.H5.13
Van-der-waals TM5 K 334 5x64 G.H5 D 381 G.H5.13
Hydrophobic ICL2 F 259 - G.H5 I 383 G.H5.15
Van-der-waals ICL2 F 259 - G.H5 I 383 G.H5.15
Aromatic ICL2 F 259 - G.H5 F 376 G.H5.08
Hydrophobic ICL2 F 259 - G.H5 F 376 G.H5.08
Van-der-waals ICL2 F 259 - G.H5 F 376 G.H5.08
Hydrophobic ICL2 F 259 - G.S3 F 219 G.S3.03
Polar H8 G 405 8x48 G.H5 E 392 G.H5.24
Van-der-waals H8 G 405 8x48 G.H5 E 392 G.H5.24
Hydrophobic ICL3 M 340 - G.S6 Y 360 G.S6.02
Hydrophobic TM5 L 331 5x61 G.H5 L 388 G.H5.20
Hydrophobic TM7 Y 400 7x57 G.H5 Y 391 G.H5.23
Polar TM3 L 255 3x58 G.H5 Q 384 G.H5.16
Hydrophobic TM3 L 255 3x58 G.H5 Q 384 G.H5.16
Van-der-waals TM3 L 255 3x58 G.H5 Q 384 G.H5.16
Hydrophobic TM3 L 255 3x58 G.H5 L 388 G.H5.20
Van-der-waals TM3 L 255 3x58 G.H5 L 388 G.H5.20
Polar TM2 R 185 2x46 G.H5 Q 390 G.H5.22
Hydrophobic TM2 R 185 2x46 G.H5 Q 390 G.H5.22
Hydrophobic ICL2 F 259 - G.H5 R 380 G.H5.12
Van-der-waals ICL2 F 259 - G.H5 R 380 G.H5.12
Hydrophobic ICL2 T 258 - G.H5 I 383 G.H5.15
Van-der-waals ICL2 T 258 - G.H5 I 383 G.H5.15
Hydrophobic ICL3 M 340 - G.h4s6 Y 358 G.h4s6.20
Van-der-waals ICL3 M 340 - G.h4s6 Y 358 G.h4s6.20
Polar TM5 K 334 5x64 G.H5 R 385 G.H5.17
Hydrophobic TM5 K 334 5x64 G.H5 R 385 G.H5.17
Van-der-waals TM5 K 334 5x64 G.H5 R 385 G.H5.17
Polar TM6 R 350 6x37 G.H5 E 392 G.H5.24
Hydrophobic TM2 H 189 2x50 G.H5 Y 391 G.H5.23
Hydrophobic ICL3 D 339 - G.H4 L 346 G.H4.16
Van-der-waals ICL3 D 339 - G.H4 L 346 G.H4.16
Polar TM5 K 334 5x64 G.H5 Q 384 G.H5.16
Hydrophobic TM5 K 334 5x64 G.H5 Q 384 G.H5.16
Van-der-waals TM5 K 334 5x64 G.H5 Q 384 G.H5.16
Hydrophobic TM5 L 331 5x61 G.H5 L 393 G.H5.25
Hydrophobic ICL3 M 340 - G.H5 R 385 G.H5.17
Van-der-waals ICL3 M 340 - G.H5 R 385 G.H5.17
Hydrophobic TM6 R 350 6x37 G.H5 L 394 G.H5.26
Polar TM6 R 350 6x37 G.H5 L 393 G.H5.25
Hydrophobic TM6 R 350 6x37 G.H5 L 393 G.H5.25
Aromatic TM2 R 185 2x46 G.H5 Y 391 G.H5.23
Hydrophobic TM2 R 185 2x46 G.H5 Y 391 G.H5.23
Van-der-waals TM2 R 185 2x46 G.H5 Y 391 G.H5.23
Ionic ICL3 D 339 - G.H4 R 342 G.H4.12
Hydrophobic TM3 L 251 3x54 G.H5 L 393 G.H5.25
Hydrophobic TM6 L 358 6x45 G.H5 L 393 G.H5.25
Aromatic ICL2 F 259 - G.S1 H 41 G.S1.02
Hydrophobic ICL2 F 259 - G.S1 H 41 G.S1.02
Van-der-waals ICL2 F 259 - G.S1 H 41 G.S1.02
Hydrophobic TM3 L 254 3x57 G.H5 Y 391 G.H5.23
Hydrophobic TM5 K 334 5x64 G.H5 L 388 G.H5.20
Hydrophobic TM3 L 254 3x57 G.H5 H 387 G.H5.19
Polar ICL3 S 337 - G.H5 R 385 G.H5.17
Van-der-waals ICL3 S 337 - G.H5 R 385 G.H5.17
Polar TM6 S 354 6x41 G.H5 L 393 G.H5.25
Van-der-waals TM6 S 354 6x41 G.H5 L 393 G.H5.25
Polar ICL2 T 258 - G.H5 Q 384 G.H5.16
Hydrophobic ICL2 T 258 - G.H5 Q 384 G.H5.16
Van-der-waals ICL2 T 258 - G.H5 Q 384 G.H5.16
Hydrophobic ICL2 F 259 - G.S3 V 217 G.S3.01
Van-der-waals ICL2 F 259 - G.S3 V 217 G.S3.01
Polar TM3 V 256 3x59 G.H5 R 380 G.H5.12
Hydrophobic TM3 Y 250 3x53 G.H5 Y 391 G.H5.23
Van-der-waals TM3 Y 250 3x53 G.H5 Y 391 G.H5.23
Polar ICL2 T 258 - G.H5 R 380 G.H5.12
Hydrophobic ICL2 T 258 - G.H5 R 380 G.H5.12
Van-der-waals ICL2 T 258 - G.H5 R 380 G.H5.12
Hydrophobic ICL2 F 259 - G.H5 C 379 G.H5.11
Hydrophobic H8 N 404 8x47 G.H5 E 392 G.H5.24
Van-der-waals H8 N 404 8x47 G.H5 E 392 G.H5.24
Hydrophobic TM5 L 335 5x65 G.H5 L 394 G.H5.26
Hydrophobic TM3 L 251 3x54 G.H5 Y 391 G.H5.23
Van-der-waals TM3 L 251 3x54 G.H5 Y 391 G.H5.23
Hydrophobic TM6 L 357 6x44 G.H5 L 393 G.H5.25
Hydrophobic TM5 L 331 5x61 G.H5 L 394 G.H5.26
Van-der-waals TM5 L 331 5x61 G.H5 L 394 G.H5.26