Gt1 - ADGRL4 complex model

GPCR CLASS (FAMILY)

B2 (Adhesion)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 85.7

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.5
PAE mean: 17.6


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar TM2 R 459 2x46 G.H5 C 347 G.H5.23
Hydrophobic TM2 R 459 2x46 G.H5 C 347 G.H5.23
Van-der-waals TM2 R 459 2x46 G.H5 C 347 G.H5.23
Hydrophobic TM3 I 518 3x57 G.H5 I 340 G.H5.16
Van-der-waals TM3 I 518 3x57 G.H5 I 340 G.H5.16
Hydrophobic TM3 G 521 3x60 G.H5 I 340 G.H5.16
Hydrophobic TM3 V 519 3x58 G.H5 I 340 G.H5.16
Hydrophobic TM3 I 518 3x57 G.H5 N 343 G.H5.19
Van-der-waals TM3 I 518 3x57 G.H5 N 343 G.H5.19
Hydrophobic ICL2 K 526 - G.hns1 A 27 G.hns1.02
Van-der-waals ICL2 K 526 - G.hns1 A 27 G.hns1.02
Hydrophobic ICL3 K 604 - G.H5 F 350 G.H5.26
Hydrophobic TM6 G 619 6x41 G.H5 L 349 G.H5.25
Van-der-waals TM6 G 619 6x41 G.H5 L 349 G.H5.25
Polar ICL3 K 604 - G.h4s6 D 311 G.h4s6.09
Hydrophobic ICL3 K 604 - G.h4s6 D 311 G.h4s6.09
Van-der-waals ICL3 K 604 - G.h4s6 D 311 G.h4s6.09
Hydrophobic TM5 L 603 5x68 G.S6 Y 316 G.S6.02
Hydrophobic TM5 V 596 5x61 G.H5 L 344 G.H5.20
Hydrophobic TM5 L 603 5x68 G.h4s6 E 314 G.h4s6.12
Van-der-waals TM5 L 603 5x68 G.h4s6 E 314 G.h4s6.12
Hydrophobic TM3 L 515 3x54 G.H5 L 349 G.H5.25
Hydrophobic TM3 G 521 3x60 G.H5 T 336 G.H5.12
Van-der-waals TM3 G 521 3x60 G.H5 T 336 G.H5.12
Ionic TM5 H 599 5x64 G.H5 D 337 G.H5.13
Polar TM5 H 599 5x64 G.H5 D 337 G.H5.13
Hydrophobic TM5 H 599 5x64 G.H5 D 337 G.H5.13
Van-der-waals TM5 H 599 5x64 G.H5 D 337 G.H5.13
Polar TM2 R 459 2x46 G.H5 D 346 G.H5.22
Hydrophobic TM3 V 520 3x59 G.H5 I 340 G.H5.16
Van-der-waals ICL2 K 526 - G.hns1 R 28 G.hns1.03
Hydrophobic ICL2 I 523 - G.S3 L 190 G.S3.01
Van-der-waals ICL2 I 523 - G.S3 L 190 G.S3.01
Polar ICL2 N 525 - G.hns1 R 28 G.hns1.03
Hydrophobic ICL2 N 525 - G.hns1 R 28 G.hns1.03
Van-der-waals ICL2 N 525 - G.hns1 R 28 G.hns1.03
Hydrophobic TM5 T 600 5x65 G.H5 F 350 G.H5.26
Van-der-waals TM5 T 600 5x65 G.H5 F 350 G.H5.26
Ionic ICL3 E 606 - G.h4s6 R 310 G.h4s6.08
Polar ICL3 E 606 - G.h4s6 R 310 G.h4s6.08
Hydrophobic ICL3 E 606 - G.h4s6 R 310 G.h4s6.08
Van-der-waals ICL3 E 606 - G.h4s6 R 310 G.h4s6.08
Hydrophobic ICL2 I 523 - G.H5 I 339 G.H5.15
Hydrophobic ICL2 I 523 - G.s2s3 D 189 G.s2s3.02
Van-der-waals ICL2 I 523 - G.s2s3 D 189 G.s2s3.02
Polar ICL2 G 527 - G.HN E 24 G.HN.52
Hydrophobic ICL2 G 527 - G.HN E 24 G.HN.52
Ionic TM4 H 530 4x43 G.HN E 24 G.HN.52
Polar TM4 H 530 4x43 G.HN E 24 G.HN.52
Hydrophobic TM3 V 519 3x58 G.H5 L 344 G.H5.20
Van-der-waals TM3 V 519 3x58 G.H5 L 344 G.H5.20
Hydrophobic TM6 L 623 6x45 G.H5 L 349 G.H5.25
Ionic H8 K 670 8x49 G.H5 D 346 G.H5.22
Polar H8 K 670 8x49 G.H5 D 346 G.H5.22
Hydrophobic H8 K 670 8x49 G.H5 D 346 G.H5.22
Van-der-waals H8 K 670 8x49 G.H5 D 346 G.H5.22
Hydrophobic TM3 L 515 3x54 G.H5 C 347 G.H5.23
Van-der-waals TM3 L 515 3x54 G.H5 C 347 G.H5.23
Hydrophobic ICL2 K 526 - G.HN E 24 G.HN.52