Golf - CCR5 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gs

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 82.0

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.5
PAE mean: 19.2


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar ICL2 R 140 34x57 G.H5 H 374 G.H5.19
Aromatic ICL2 R 140 34x57 G.H5 H 374 G.H5.19
Van-der-waals ICL2 R 140 34x57 G.H5 H 374 G.H5.19
Hydrophobic TM6 I 237 6x37 G.H5 L 380 G.H5.25
Polar TM5 C 224 5x68 G.H5 R 372 G.H5.17
Hydrophobic TM5 C 224 5x68 G.H5 R 372 G.H5.17
Van-der-waals TM5 C 224 5x68 G.H5 R 372 G.H5.17
Hydrophobic TM6 A 233 6x33 G.H5 L 380 G.H5.25
Van-der-waals TM6 A 233 6x33 G.H5 L 380 G.H5.25
Hydrophobic ICL2 A 133 34x50 G.H5 Q 371 G.H5.16
Van-der-waals ICL2 A 133 34x50 G.H5 Q 371 G.H5.16
Hydrophobic ICL2 A 133 34x50 G.H5 I 370 G.H5.15
Hydrophobic ICL2 A 133 34x50 G.H5 H 374 G.H5.19
Ionic H8 R 305 8x51 G.H5 E 379 G.H5.24
Polar H8 R 305 8x51 G.H5 E 379 G.H5.24
Polar H8 E 302 8x48 G.H5 E 379 G.H5.24
Hydrophobic H8 E 302 8x48 G.H5 E 379 G.H5.24
Van-der-waals H8 E 302 8x48 G.H5 E 379 G.H5.24
Hydrophobic ICL2 K 138 34x55 G.hns1 A 41 G.hns1.03
Van-der-waals ICL2 K 138 34x55 G.hns1 A 41 G.hns1.03
Polar TM2 T 65 2x39 G.H5 Y 378 G.H5.23
Hydrophobic TM2 T 65 2x39 G.H5 Y 378 G.H5.23
Van-der-waals TM2 T 65 2x39 G.H5 Y 378 G.H5.23
Hydrophobic ICL2 L 137 34x54 G.S1 H 43 G.S1.02
Van-der-waals ICL2 L 137 34x54 G.S1 H 43 G.S1.02
Hydrophobic TM6 L 236 6x36 G.H5 L 380 G.H5.25
Polar TM6 K 229 6x29 G.H5 L 381 G.H5.26
Hydrophobic TM6 K 229 6x29 G.H5 L 381 G.H5.26
Van-der-waals TM6 K 229 6x29 G.H5 L 381 G.H5.26
Polar TM6 N 226 6x26 G.h4s6 Y 345 G.h4s6.20
Hydrophobic TM6 N 226 6x26 G.h4s6 Y 345 G.h4s6.20
Van-der-waals TM6 N 226 6x26 G.h4s6 Y 345 G.h4s6.20
Aromatic C-term Y 339 - G.hns1 Y 39 G.hns1.01
Hydrophobic C-term Y 339 - G.hns1 Y 39 G.hns1.01
Van-der-waals C-term Y 339 - G.hns1 Y 39 G.hns1.01
Polar TM3 R 126 3x50 G.H5 Y 378 G.H5.23
Hydrophobic TM3 R 126 3x50 G.H5 Y 378 G.H5.23
Hydrophobic ICL2 V 134 34x51 G.S3 V 204 G.S3.01
Van-der-waals ICL2 V 134 34x51 G.S3 V 204 G.S3.01
Hydrophobic ICL2 A 136 34x53 G.H5 H 374 G.H5.19
Polar H8 K 303 8x49 G.H5 E 379 G.H5.24
Van-der-waals H8 K 303 8x49 G.H5 E 379 G.H5.24
Hydrophobic TM5 L 221 5x65 G.H5 L 375 G.H5.20
Hydrophobic ICL2 L 137 34x54 G.H5 I 370 G.H5.15
Polar TM3 V 131 3x55 G.H5 Q 371 G.H5.16
Van-der-waals TM7 V 300 7x56 G.H5 E 379 G.H5.24
Polar TM3 V 130 3x54 G.H5 Q 371 G.H5.16
Hydrophobic TM3 V 130 3x54 G.H5 Q 371 G.H5.16
Van-der-waals TM3 V 130 3x54 G.H5 Q 371 G.H5.16
Hydrophobic TM3 V 130 3x54 G.H5 L 375 G.H5.20
Van-der-waals TM3 V 130 3x54 G.H5 L 375 G.H5.20
Polar C-term Y 339 - G.S1 R 44 G.S1.03
Hydrophobic C-term Y 339 - G.S1 R 44 G.S1.03
Van-der-waals C-term Y 339 - G.S1 R 44 G.S1.03
Polar TM3 D 125 3x49 G.H5 Y 378 G.H5.23
Hydrophobic TM3 D 125 3x49 G.H5 Y 378 G.H5.23
Van-der-waals TM3 D 125 3x49 G.H5 Y 378 G.H5.23
Polar TM5 C 224 5x68 G.H5 D 368 G.H5.13
Hydrophobic TM5 C 224 5x68 G.H5 D 368 G.H5.13
Van-der-waals TM5 C 224 5x68 G.H5 D 368 G.H5.13
Hydrophobic ICL2 V 134 34x51 G.H5 I 370 G.H5.15
Hydrophobic TM3 A 129 3x53 G.H5 Y 378 G.H5.23
Van-der-waals TM3 A 129 3x53 G.H5 Y 378 G.H5.23
Hydrophobic ICL2 V 134 34x51 G.H5 R 367 G.H5.12
Polar TM3 A 129 3x53 G.H5 H 374 G.H5.19
Hydrophobic TM3 A 129 3x53 G.H5 H 374 G.H5.19
Van-der-waals TM3 A 129 3x53 G.H5 H 374 G.H5.19
Hydrophobic ICL2 V 134 34x51 G.S1 H 43 G.S1.02
Polar ICL2 R 140 34x57 G.H5 Y 378 G.H5.23
Hydrophobic ICL2 R 140 34x57 G.H5 Y 378 G.H5.23
Van-der-waals ICL2 R 140 34x57 G.H5 Y 378 G.H5.23
Hydrophobic TM4 T 141 4x38 G.HN L 37 G.HN.52
Van-der-waals TM4 T 141 4x38 G.HN L 37 G.HN.52
Hydrophobic H8 G 301 8x47 G.H5 E 379 G.H5.24
Van-der-waals H8 G 301 8x47 G.H5 E 379 G.H5.24
Polar C-term Y 339 - G.h2s4 D 227 G.h2s4.03
Hydrophobic C-term Y 339 - G.h2s4 D 227 G.h2s4.03
Van-der-waals C-term Y 339 - G.h2s4 D 227 G.h2s4.03
Hydrophobic TM5 T 220 5x64 G.H5 Q 371 G.H5.16
Van-der-waals TM5 T 220 5x64 G.H5 Q 371 G.H5.16
Hydrophobic TM6 N 226 6x26 G.H5 L 381 G.H5.26
Hydrophobic ICL2 L 137 34x54 G.H5 H 374 G.H5.19
Polar ICL2 K 138 34x55 G.s2s3 K 203 G.s2s3.02
Van-der-waals ICL2 K 138 34x55 G.s2s3 K 203 G.s2s3.02
Hydrophobic TM5 L 221 5x65 G.H5 L 381 G.H5.26