G13 - CCR9 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 78.9

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.6
PAE mean: 15.0


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar ICL2 T 156 34x55 G.hns1 R 47 G.hns1.03
Hydrophobic ICL2 T 156 34x55 G.hns1 R 47 G.hns1.03
Van-der-waals ICL2 T 156 34x55 G.hns1 R 47 G.hns1.03
Polar TM4 E 159 4x36 G.HN Y 44 G.HN.53
Polar ICL3 K 245 - G.H5 D 364 G.H5.13
Hydrophobic ICL2 M 152 34x51 G.S3 F 218 G.S3.03
Van-der-waals ICL2 M 152 34x51 G.S3 F 218 G.S3.03
Hydrophobic ICL2 M 152 34x51 G.H5 I 366 G.H5.15
Van-der-waals ICL2 M 152 34x51 G.H5 I 366 G.H5.15
Hydrophobic ICL2 M 152 34x51 G.S3 V 216 G.S3.01
Van-der-waals ICL2 M 152 34x51 G.S3 V 216 G.S3.01
Polar ICL2 H 155 34x54 G.hns1 K 46 G.hns1.02
Hydrophobic ICL2 H 155 34x54 G.hns1 K 46 G.hns1.02
Van-der-waals ICL2 H 155 34x54 G.hns1 K 46 G.hns1.02
Polar C-term K 354 - G.h4s6 Q 339 G.h4s6.13
Hydrophobic C-term K 354 - G.h4s6 Q 339 G.h4s6.13
Van-der-waals C-term K 354 - G.h4s6 Q 339 G.h4s6.13
Hydrophobic ICL2 M 152 34x51 G.H5 F 359 G.H5.08
Polar TM3 A 147 3x53 G.H5 N 370 G.H5.19
Hydrophobic TM3 A 147 3x53 G.H5 N 370 G.H5.19
Van-der-waals TM3 A 147 3x53 G.H5 N 370 G.H5.19
Hydrophobic TM3 R 144 3x50 G.H5 L 376 G.H5.25
Hydrophobic H8 R 323 8x49 G.H5 M 375 G.H5.24
Polar H8 E 322 8x48 G.H5 Q 377 G.H5.26
Hydrophobic H8 E 322 8x48 G.H5 Q 377 G.H5.26
Van-der-waals H8 E 322 8x48 G.H5 Q 377 G.H5.26
Hydrophobic C-term M 358 - G.h4s6 K 340 G.h4s6.19
Van-der-waals C-term M 358 - G.h4s6 K 340 G.h4s6.19
Hydrophobic ICL2 T 156 34x55 G.S3 P 217 G.S3.02
Hydrophobic ICL2 A 151 34x50 G.H5 I 366 G.H5.15
Van-der-waals ICL2 A 151 34x50 G.H5 I 366 G.H5.15
Hydrophobic ICL2 H 155 34x54 G.H5 I 366 G.H5.15
Hydrophobic TM6 A 252 6x33 G.H5 L 371 G.H5.20
Hydrophobic TM3 I 148 3x54 G.H5 L 376 G.H5.25
Van-der-waals TM3 I 148 3x54 G.H5 L 376 G.H5.25
Hydrophobic ICL3 K 246 - G.h4s6 P 341 G.h4s6.20
Van-der-waals ICL3 K 246 - G.h4s6 P 341 G.h4s6.20
Hydrophobic ICL3 K 246 - G.H5 H 368 G.H5.17
Van-der-waals ICL3 K 246 - G.H5 H 368 G.H5.17
Polar ICL2 A 151 34x50 G.H5 N 370 G.H5.19
Polar H8 R 323 8x49 G.H5 Q 373 G.H5.22
Hydrophobic H8 R 323 8x49 G.H5 Q 373 G.H5.22
Van-der-waals H8 R 323 8x49 G.H5 Q 373 G.H5.22
Hydrophobic TM7 V 318 7x54 G.H5 M 375 G.H5.24
Van-der-waals TM7 V 318 7x54 G.H5 M 375 G.H5.24
Polar ICL2 H 155 34x54 G.hns1 R 47 G.hns1.03
Hydrophobic TM3 I 148 3x54 G.H5 L 371 G.H5.20
Van-der-waals TM3 I 148 3x54 G.H5 L 371 G.H5.20
Hydrophobic C-term M 358 - G.h4s6 R 334 G.h4s6.08
Van-der-waals C-term M 358 - G.h4s6 R 334 G.h4s6.08
Hydrophobic TM2 L 87 2x43 G.H5 M 375 G.H5.24
Van-der-waals TM2 L 87 2x43 G.H5 M 375 G.H5.24
Polar ICL3 K 246 - G.S6 Y 343 G.S6.02
Hydrophobic ICL3 K 246 - G.S6 Y 343 G.S6.02
Van-der-waals ICL3 K 246 - G.S6 Y 343 G.S6.02
Hydrophobic C-term M 358 - G.h4s6 Q 338 G.h4s6.12
Van-der-waals C-term M 358 - G.h4s6 Q 338 G.h4s6.12
Hydrophobic C-term M 358 - G.h4s6 Q 339 G.h4s6.13
Van-der-waals C-term M 358 - G.h4s6 Q 339 G.h4s6.13
Polar TM6 A 252 6x33 G.H5 L 376 G.H5.25
Hydrophobic TM6 A 252 6x33 G.H5 L 376 G.H5.25
Van-der-waals TM6 A 252 6x33 G.H5 L 376 G.H5.25
Hydrophobic TM3 A 147 3x53 G.H5 L 374 G.H5.23
Van-der-waals TM3 A 147 3x53 G.H5 L 374 G.H5.23
Hydrophobic ICL2 A 151 34x50 G.H5 L 367 G.H5.16
Polar H8 G 321 8x47 G.H5 M 375 G.H5.24
Hydrophobic H8 G 321 8x47 G.H5 M 375 G.H5.24
Van-der-waals H8 G 321 8x47 G.H5 M 375 G.H5.24
Hydrophobic TM4 E 159 4x36 G.HN T 43 G.HN.52
Van-der-waals TM4 E 159 4x36 G.HN T 43 G.HN.52
Van-der-waals ICL3 K 246 - G.H5 T 365 G.H5.14
Polar TM6 S 248 6x29 G.H5 H 368 G.H5.17
Hydrophobic TM6 S 248 6x29 G.H5 H 368 G.H5.17
Van-der-waals TM6 S 248 6x29 G.H5 H 368 G.H5.17
Hydrophobic TM6 T 256 6x37 G.H5 L 376 G.H5.25
Van-der-waals TM6 T 256 6x37 G.H5 L 376 G.H5.25
Hydrophobic ICL2 M 152 34x51 G.H5 V 362 G.H5.11
Polar C-term T 362 - G.H4 R 331 G.H4.16
Hydrophobic C-term T 362 - G.H4 R 331 G.H4.16
Van-der-waals C-term T 362 - G.H4 R 331 G.H4.16
Ionic TM4 E 159 4x36 G.hns1 R 47 G.hns1.03
Polar TM4 E 159 4x36 G.hns1 R 47 G.hns1.03
Hydrophobic TM4 E 159 4x36 G.hns1 R 47 G.hns1.03
Van-der-waals TM4 E 159 4x36 G.hns1 R 47 G.hns1.03
Hydrophobic TM3 I 148 3x54 G.H5 L 367 G.H5.16
Van-der-waals TM3 I 148 3x54 G.H5 L 367 G.H5.16
Polar TM6 S 248 6x29 G.H5 Q 377 G.H5.26
Hydrophobic TM6 S 248 6x29 G.H5 Q 377 G.H5.26
Van-der-waals TM6 S 248 6x29 G.H5 Q 377 G.H5.26
Hydrophobic H8 F 324 8x50 G.H5 M 375 G.H5.24
Van-der-waals H8 F 324 8x50 G.H5 M 375 G.H5.24
Hydrophobic ICL2 H 155 34x54 G.S1 V 49 G.S1.02
Hydrophobic C-term L 355 - G.h4s6 D 336 G.h4s6.10
Van-der-waals C-term L 355 - G.h4s6 D 336 G.h4s6.10
Polar TM4 R 158 4x35 G.H5 Q 373 G.H5.22
Hydrophobic TM4 R 158 4x35 G.H5 Q 373 G.H5.22
Van-der-waals TM4 R 158 4x35 G.H5 Q 373 G.H5.22
Hydrophobic TM2 T 83 2x39 G.H5 L 374 G.H5.23
Van-der-waals TM2 T 83 2x39 G.H5 L 374 G.H5.23
Hydrophobic TM3 I 148 3x54 G.H5 L 374 G.H5.23
Hydrophobic TM6 V 255 6x36 G.H5 L 376 G.H5.25
Van-der-waals TM6 V 255 6x36 G.H5 L 376 G.H5.25
Hydrophobic ICL3 K 245 - G.H5 R 360 G.H5.09
Hydrophobic ICL2 H 155 34x54 G.S1 L 48 G.S1.01
Ionic ICL3 K 246 - G.H5 D 364 G.H5.13
Polar ICL3 K 246 - G.H5 D 364 G.H5.13
Hydrophobic ICL3 K 246 - G.H5 D 364 G.H5.13
Van-der-waals ICL3 K 246 - G.H5 D 364 G.H5.13
Hydrophobic TM5 L 241 5x65 G.H5 L 371 G.H5.20
Van-der-waals TM5 L 241 5x65 G.H5 L 371 G.H5.20
Hydrophobic ICL2 M 152 34x51 G.H5 K 363 G.H5.12
Van-der-waals ICL2 M 152 34x51 G.H5 K 363 G.H5.12
Hydrophobic ICL2 M 152 34x51 G.S1 V 49 G.S1.02
Hydrophobic TM5 A 244 5x68 G.H5 L 367 G.H5.16
Van-der-waals TM5 A 244 5x68 G.H5 L 367 G.H5.16
Polar TM3 R 144 3x50 G.H5 L 374 G.H5.23
Hydrophobic TM3 R 144 3x50 G.H5 L 374 G.H5.23
Hydrophobic TM7 Y 317 7x53 G.H5 M 375 G.H5.24
Van-der-waals TM7 Y 317 7x53 G.H5 M 375 G.H5.24
Hydrophobic ICL2 T 156 34x55 G.S3 V 216 G.S3.01
Hydrophobic TM6 K 251 6x32 G.H5 Q 377 G.H5.26
Van-der-waals TM6 K 251 6x32 G.H5 Q 377 G.H5.26