Golf - ETB receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gs

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 79.3

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.8
PAE mean: 11.9


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar TM6 Q 317 6x29 G.H5 R 372 G.H5.17
Van-der-waals TM6 Q 317 6x29 G.H5 R 372 G.H5.17
Hydrophobic ICL2 I 209 34x53 G.H5 M 373 G.H5.18
Van-der-waals ICL2 I 209 34x53 G.H5 M 373 G.H5.18
Polar TM5 K 304 5x69 G.H5 N 364 G.H5.09
Hydrophobic TM5 K 304 5x69 G.H5 N 364 G.H5.09
Van-der-waals TM5 K 304 5x69 G.H5 N 364 G.H5.09
Hydrophobic ICL3 Q 308 - G.S6 F 350 G.S6.05
Van-der-waals ICL3 Q 308 - G.S6 F 350 G.S6.05
Hydrophobic ICL2 R 208 34x52 G.S1 H 43 G.S1.02
Hydrophobic TM2 P 136 2x39 G.H5 Q 377 G.H5.22
Polar TM3 A 202 3x53 G.H5 H 374 G.H5.19
Hydrophobic TM3 A 202 3x53 G.H5 H 374 G.H5.19
Van-der-waals TM3 A 202 3x53 G.H5 H 374 G.H5.19
Polar ICL2 R 208 34x52 G.h2s4 T 229 G.h2s4.05
Hydrophobic ICL3 A 310 - G.S6 P 348 G.S6.03
Hydrophobic TM5 M 307 5x72 G.H5 D 368 G.H5.13
Van-der-waals TM5 M 307 5x72 G.H5 D 368 G.H5.13
Ionic TM5 E 299 5x64 G.H5 R 367 G.H5.12
Polar TM5 E 299 5x64 G.H5 R 367 G.H5.12
Hydrophobic TM5 E 299 5x64 G.H5 R 367 G.H5.12
Van-der-waals TM5 E 299 5x64 G.H5 R 367 G.H5.12
Polar ICL2 K 210 34x54 G.H5 Q 377 G.H5.22
Van-der-waals ICL2 K 210 34x54 G.H5 Q 377 G.H5.22
Hydrophobic ICL2 W 206 34x50 G.S3 F 206 G.S3.03
Polar TM6 H 314 6x26 G.S6 Y 347 G.S6.02
Hydrophobic TM6 H 314 6x26 G.S6 Y 347 G.S6.02
Polar TM5 E 299 5x64 G.H5 Q 371 G.H5.16
Van-der-waals TM5 E 299 5x64 G.H5 Q 371 G.H5.16
Hydrophobic TM3 L 195 3x46 G.H5 Y 378 G.H5.23
Hydrophobic TM6 V 325 6x37 G.H5 L 380 G.H5.25
Ionic TM6 R 318 6x30 G.H5 D 368 G.H5.13
Polar TM6 R 318 6x30 G.H5 D 368 G.H5.13
Hydrophobic TM6 R 318 6x30 G.H5 D 368 G.H5.13
Van-der-waals TM6 R 318 6x30 G.H5 D 368 G.H5.13
Hydrophobic TM3 R 199 3x50 G.H5 L 380 G.H5.25
Polar TM6 R 318 6x30 G.H5 Q 371 G.H5.16
Hydrophobic TM6 R 318 6x30 G.H5 Q 371 G.H5.16
Van-der-waals TM6 R 318 6x30 G.H5 Q 371 G.H5.16
Van-der-waals TM5 K 304 5x69 G.H5 F 363 G.H5.08
Hydrophobic ICL2 W 206 34x50 G.H5 R 367 G.H5.12
Van-der-waals ICL2 W 206 34x50 G.H5 R 367 G.H5.12
Hydrophobic ICL3 I 309 - G.hgh4 D 310 G.hgh4.13
Van-der-waals ICL3 I 309 - G.hgh4 D 310 G.hgh4.13
Aromatic ICL2 W 206 34x50 G.H5 F 363 G.H5.08
Hydrophobic ICL2 W 206 34x50 G.H5 F 363 G.H5.08
Van-der-waals ICL2 W 206 34x50 G.H5 F 363 G.H5.08
Polar ICL2 R 208 34x52 G.h2s4 D 227 G.h2s4.03
Van-der-waals ICL2 R 208 34x52 G.h2s4 D 227 G.h2s4.03
Polar ICL2 R 208 34x52 G.hns1 K 40 G.hns1.02
Hydrophobic ICL2 R 208 34x52 G.hns1 K 40 G.hns1.02
Van-der-waals ICL2 R 208 34x52 G.hns1 K 40 G.hns1.02
Polar TM3 D 198 3x49 G.H5 Y 378 G.H5.23
Hydrophobic TM3 D 198 3x49 G.H5 Y 378 G.H5.23
Van-der-waals TM3 D 198 3x49 G.H5 Y 378 G.H5.23
Polar H8 S 390 8x47 G.H5 E 379 G.H5.24
Hydrophobic H8 S 390 8x47 G.H5 E 379 G.H5.24
Van-der-waals H8 S 390 8x47 G.H5 E 379 G.H5.24
Hydrophobic TM2 P 136 2x39 G.H5 Y 378 G.H5.23
Van-der-waals TM2 P 136 2x39 G.H5 Y 378 G.H5.23
Hydrophobic ICL2 W 206 34x50 G.H5 C 366 G.H5.11
Hydrophobic TM5 M 307 5x72 G.H5 D 365 G.H5.10
Polar TM3 V 203 3x54 G.H5 Q 371 G.H5.16
Hydrophobic TM3 V 203 3x54 G.H5 Q 371 G.H5.16
Van-der-waals TM3 V 203 3x54 G.H5 Q 371 G.H5.16
Hydrophobic ICL3 L 311 - G.S6 Y 347 G.S6.02
Polar ICL2 R 208 34x52 G.S1 T 42 G.S1.01
Hydrophobic ICL2 R 208 34x52 G.S1 T 42 G.S1.01
Van-der-waals ICL2 R 208 34x52 G.S1 T 42 G.S1.01
Ionic TM5 K 304 5x69 G.s2s3 D 202 G.s2s3.01
Polar TM5 K 304 5x69 G.s2s3 D 202 G.s2s3.01
Polar TM2 N 137 2x40 G.H5 E 379 G.H5.24
Hydrophobic TM2 N 137 2x40 G.H5 E 379 G.H5.24
Hydrophobic TM3 A 202 3x53 G.H5 Y 378 G.H5.23
Van-der-waals TM3 A 202 3x53 G.H5 Y 378 G.H5.23
Ionic H8 R 392 8x49 G.H5 E 379 G.H5.24
Polar H8 R 392 8x49 G.H5 E 379 G.H5.24
Hydrophobic H8 R 392 8x49 G.H5 E 379 G.H5.24
Van-der-waals H8 R 392 8x49 G.H5 E 379 G.H5.24
Polar ICL2 R 208 34x52 G.hns1 Y 39 G.hns1.01
Aromatic ICL2 R 208 34x52 G.hns1 Y 39 G.hns1.01
Hydrophobic ICL2 W 206 34x50 G.H5 I 370 G.H5.15
Van-der-waals ICL2 W 206 34x50 G.H5 I 370 G.H5.15
Hydrophobic ICL2 I 209 34x53 G.H5 H 374 G.H5.19
Hydrophobic H8 F 393 8x50 G.H5 E 379 G.H5.24
Polar TM6 H 314 6x26 G.H5 R 372 G.H5.17
Aromatic TM6 H 314 6x26 G.H5 R 372 G.H5.17
Hydrophobic TM6 H 314 6x26 G.H5 R 372 G.H5.17
Van-der-waals TM6 H 314 6x26 G.H5 R 372 G.H5.17
Hydrophobic TM3 V 203 3x54 G.H5 L 375 G.H5.20
Ionic TM6 H 314 6x26 G.H5 D 368 G.H5.13
Polar TM6 H 314 6x26 G.H5 D 368 G.H5.13
Hydrophobic TM6 H 314 6x26 G.H5 D 368 G.H5.13
Van-der-waals TM6 H 314 6x26 G.H5 D 368 G.H5.13
Aromatic TM6 H 314 6x26 G.h4s6 Y 345 G.h4s6.20
Hydrophobic TM6 H 314 6x26 G.h4s6 Y 345 G.h4s6.20
Van-der-waals TM6 H 314 6x26 G.h4s6 Y 345 G.h4s6.20
Hydrophobic ICL3 Q 308 - G.S6 H 349 G.S6.04
Hydrophobic TM6 Q 317 6x29 G.H5 L 381 G.H5.26
Van-der-waals ICL2 R 208 34x52 G.S1 R 44 G.S1.03
Hydrophobic TM7 V 389 7x56 G.H5 L 380 G.H5.25
Polar TM3 R 199 3x50 G.H5 Y 378 G.H5.23
Hydrophobic TM3 R 199 3x50 G.H5 Y 378 G.H5.23
Van-der-waals TM3 R 199 3x50 G.H5 Y 378 G.H5.23
Hydrophobic ICL3 I 309 - G.hgh4 A 311 G.hgh4.14
Hydrophobic TM6 V 321 6x33 G.H5 L 381 G.H5.26
Hydrophobic TM6 V 321 6x33 G.H5 L 380 G.H5.25
Van-der-waals TM6 V 321 6x33 G.H5 L 380 G.H5.25
Hydrophobic TM6 V 321 6x33 G.H5 L 375 G.H5.20
Polar ICL2 W 206 34x50 G.S1 H 43 G.S1.02
Hydrophobic ICL2 W 206 34x50 G.S1 H 43 G.S1.02
Van-der-waals ICL2 W 206 34x50 G.S1 H 43 G.S1.02
Hydrophobic TM5 M 307 5x72 G.H5 N 364 G.H5.09
Van-der-waals TM5 M 307 5x72 G.H5 N 364 G.H5.09
Polar ICL2 S 207 34x51 G.H5 H 374 G.H5.19
Hydrophobic ICL2 S 207 34x51 G.H5 H 374 G.H5.19
Van-der-waals ICL2 S 207 34x51 G.H5 H 374 G.H5.19
Hydrophobic ICL2 W 206 34x50 G.S3 V 204 G.S3.01
Van-der-waals ICL2 W 206 34x50 G.S3 V 204 G.S3.01
Hydrophobic TM5 M 300 5x65 G.H5 L 375 G.H5.20
Van-der-waals TM5 M 300 5x65 G.H5 L 375 G.H5.20
Hydrophobic ICL3 I 309 - G.H4 F 326 G.H4.08
Polar ICL1 N 134 12x52 G.H5 Q 377 G.H5.22
Hydrophobic ICL1 N 134 12x52 G.H5 Q 377 G.H5.22
Van-der-waals ICL1 N 134 12x52 G.H5 Q 377 G.H5.22
Hydrophobic ICL2 I 209 34x53 G.H5 Q 377 G.H5.22
Van-der-waals ICL2 I 209 34x53 G.H5 Q 377 G.H5.22