Gi1 - GAL1 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 84.4

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.7
PAE mean: 12.7


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM5 L 231 5x69 G.H5 D 341 G.H5.13
Van-der-waals TM5 L 231 5x69 G.H5 D 341 G.H5.13
Polar TM6 K 244 6x32 G.H5 F 354 G.H5.26
Hydrophobic TM6 K 244 6x32 G.H5 F 354 G.H5.26
Van-der-waals TM6 K 244 6x32 G.H5 F 354 G.H5.26
Polar TM6 K 237 6x25 G.h4s6 T 316 G.h4s6.10
Hydrophobic TM6 K 237 6x25 G.h4s6 T 316 G.h4s6.10
Van-der-waals TM6 K 237 6x25 G.h4s6 T 316 G.h4s6.10
Ionic ICL2 R 142 34x52 G.s2s3 D 193 G.s2s3.02
Polar ICL2 R 142 34x52 G.s2s3 D 193 G.s2s3.02
Hydrophobic ICL2 R 142 34x52 G.s2s3 D 193 G.s2s3.02
Van-der-waals ICL2 R 142 34x52 G.s2s3 D 193 G.s2s3.02
Hydrophobic TM5 L 231 5x69 G.H5 I 344 G.H5.16
Polar TM3 R 133 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 133 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 133 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 I 137 3x54 G.H5 I 344 G.H5.16
Hydrophobic TM5 H 226 5x64 G.H5 I 344 G.H5.16
Van-der-waals TM5 H 226 5x64 G.H5 I 344 G.H5.16
Hydrophobic ICL3 M 234 - G.h4s6 E 318 G.h4s6.12
Van-der-waals ICL3 M 234 - G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL2 R 141 34x51 G.H5 F 336 G.H5.08
Van-der-waals ICL2 R 141 34x51 G.H5 F 336 G.H5.08
Polar TM4 S 149 4x39 G.HN R 24 G.HN.48
Hydrophobic TM4 S 149 4x39 G.HN R 24 G.HN.48
Van-der-waals TM4 S 149 4x39 G.HN R 24 G.HN.48
Hydrophobic TM3 R 133 3x50 G.H5 L 353 G.H5.25
Hydrophobic TM4 R 150 4x40 G.HN R 24 G.HN.48
Van-der-waals TM4 R 150 4x40 G.HN R 24 G.HN.48
Hydrophobic ICL2 S 140 34x50 G.H5 I 343 G.H5.15
Hydrophobic ICL3 M 234 - G.H5 K 345 G.H5.17
Van-der-waals ICL3 M 234 - G.H5 K 345 G.H5.17
Hydrophobic TM6 S 241 6x29 G.H5 F 354 G.H5.26
Van-der-waals TM6 S 241 6x29 G.H5 F 354 G.H5.26
Polar ICL2 S 144 34x54 G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 S 144 34x54 G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 S 144 34x54 G.hns1 R 32 G.hns1.03
Polar TM3 A 136 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 A 136 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 136 3x53 G.H5 N 347 G.H5.19
Hydrophobic H8 S 307 8x47 G.H5 G 352 G.H5.24
Hydrophobic TM3 A 136 3x53 G.H5 C 351 G.H5.23
Van-der-waals TM3 A 136 3x53 G.H5 C 351 G.H5.23
Hydrophobic TM3 I 137 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 137 3x54 G.H5 L 348 G.H5.20
Polar TM2 T 70 2x39 G.H5 D 350 G.H5.22
Polar ICL2 S 145 34x55 G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 S 145 34x55 G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 S 145 34x55 G.hns1 R 32 G.hns1.03
Hydrophobic TM3 I 137 3x54 G.H5 L 353 G.H5.25
Polar ICL2 R 147 34x57 G.H5 C 351 G.H5.23
Hydrophobic ICL2 R 147 34x57 G.H5 C 351 G.H5.23
Van-der-waals ICL2 R 147 34x57 G.H5 C 351 G.H5.23
Hydrophobic TM5 L 227 5x65 G.H5 L 348 G.H5.20
Hydrophobic TM4 V 148 4x38 G.HN E 28 G.HN.52
Van-der-waals TM4 V 148 4x38 G.HN E 28 G.HN.52
Polar TM6 S 235 6x23 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 S 235 6x23 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 S 235 6x23 G.h4s6 E 318 G.h4s6.12
Polar H8 N 309 8x49 G.H5 K 349 G.H5.21
Van-der-waals H8 N 309 8x49 G.H5 K 349 G.H5.21
Polar ICL2 S 140 34x50 G.H5 N 347 G.H5.19
Hydrophobic TM5 L 231 5x69 G.H5 K 345 G.H5.17
Polar ICL2 S 143 34x53 G.H5 N 347 G.H5.19
Van-der-waals ICL2 S 143 34x53 G.H5 N 347 G.H5.19
Polar TM6 T 245 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM6 T 245 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 T 245 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM5 L 227 5x65 G.H5 I 344 G.H5.16
Van-der-waals TM5 L 227 5x65 G.H5 I 344 G.H5.16
Polar TM6 K 237 6x25 G.h4s6 D 315 G.h4s6.09
Hydrophobic TM6 K 237 6x25 G.h4s6 D 315 G.h4s6.09
Van-der-waals TM6 K 237 6x25 G.h4s6 D 315 G.h4s6.09
Polar ICL2 S 144 34x54 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 S 144 34x54 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 S 144 34x54 G.hns1 A 31 G.hns1.02
Polar TM2 T 70 2x39 G.H5 C 351 G.H5.23
Hydrophobic TM2 T 70 2x39 G.H5 C 351 G.H5.23
Ionic ICL2 R 147 34x57 G.H5 D 350 G.H5.22
Polar ICL2 R 147 34x57 G.H5 D 350 G.H5.22
Van-der-waals ICL2 R 147 34x57 G.H5 D 350 G.H5.22
Polar TM2 S 68 2x37 G.H5 D 350 G.H5.22
Hydrophobic TM2 S 68 2x37 G.H5 D 350 G.H5.22
Van-der-waals TM2 S 68 2x37 G.H5 D 350 G.H5.22
Hydrophobic TM6 V 249 6x37 G.H5 L 353 G.H5.25
Polar ICL2 R 141 34x51 G.s2s3 K 192 G.s2s3.01
Van-der-waals ICL2 R 141 34x51 G.s2s3 K 192 G.s2s3.01
Hydrophobic TM6 T 245 6x33 G.H5 L 348 G.H5.20
Hydrophobic ICL2 S 140 34x50 G.H5 I 344 G.H5.16
Hydrophobic TM6 T 248 6x36 G.H5 L 353 G.H5.25
Hydrophobic ICL2 R 141 34x51 G.S3 L 194 G.S3.01