G15 - GIP receptor complex model

GPCR CLASS (FAMILY)

B1 (Secretin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gq/11

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 77.9

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.3
PAE mean: 23.5


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM3 L 241 3x54 G.H5 Y 367 G.H5.19
Van-der-waals TM3 L 241 3x54 G.H5 Y 367 G.H5.19
Hydrophobic ICL2 V 248 - G.H5 F 356 G.H5.08
Van-der-waals ICL2 V 248 - G.H5 F 356 G.H5.08
Hydrophobic TM6 R 338 6x37 G.h4s6 R 335 G.h4s6.17
Hydrophobic TM2 R 169 2x46 G.H5 I 371 G.H5.23
Van-der-waals TM2 R 169 2x46 G.H5 I 371 G.H5.23
Hydrophobic ICL2 V 248 - G.H5 R 360 G.H5.12
Van-der-waals ICL2 V 248 - G.H5 R 360 G.H5.12
Ionic TM6 D 334 6x33 G.h4s6 K 331 G.h4s6.13
Hydrophobic ICL2 G 249 - G.S1 L 43 G.S1.02
Ionic ICL2 E 253 - G.hns1 R 40 G.hns1.02
Polar ICL2 E 253 - G.hns1 R 40 G.hns1.02
Hydrophobic ICL2 E 253 - G.hns1 R 40 G.hns1.02
Van-der-waals ICL2 E 253 - G.hns1 R 40 G.hns1.02
Polar ICL2 V 248 - G.S3 T 202 G.S3.01
Hydrophobic ICL2 V 248 - G.S3 T 202 G.S3.01
Van-der-waals ICL2 V 248 - G.S3 T 202 G.S3.01
Van-der-waals ICL2 G 249 - G.hns1 G 41 G.hns1.03
Polar C-term Y 465 - G.h2s4 N 225 G.h2s4.03
Hydrophobic C-term Y 465 - G.h2s4 N 225 G.h2s4.03
Van-der-waals C-term Y 465 - G.h2s4 N 225 G.h2s4.03
Hydrophobic TM6 L 346 6x45 G.H5 L 373 G.H5.25
Van-der-waals TM6 L 346 6x45 G.H5 L 373 G.H5.25
Hydrophobic TM2 R 169 2x46 G.H5 Y 367 G.H5.19
Van-der-waals TM2 R 169 2x46 G.H5 Y 367 G.H5.19
Hydrophobic TM3 L 245 3x58 G.H5 L 364 G.H5.16
Van-der-waals TM3 L 245 3x58 G.H5 L 364 G.H5.16
Polar TM5 R 328 5x68 G.h4s6 S 336 G.h4s6.18
Van-der-waals TM5 R 328 5x68 G.h4s6 S 336 G.h4s6.18
Ionic TM2 R 169 2x46 G.H5 E 370 G.H5.22
Polar TM2 R 169 2x46 G.H5 E 370 G.H5.22
Hydrophobic TM2 R 169 2x46 G.H5 E 370 G.H5.22
Van-der-waals TM2 R 169 2x46 G.H5 E 370 G.H5.22
Hydrophobic TM3 V 246 3x59 G.H5 R 360 G.H5.12
Polar TM5 K 324 5x64 G.h4s6 R 338 G.h4s6.20
Hydrophobic TM5 K 324 5x64 G.h4s6 R 338 G.h4s6.20
Van-der-waals TM5 K 324 5x64 G.h4s6 R 338 G.h4s6.20
Hydrophobic TM5 K 324 5x64 G.H5 L 364 G.H5.16
Van-der-waals TM5 K 324 5x64 G.H5 L 364 G.H5.16
Hydrophobic TM3 Y 240 3x53 G.H5 Y 367 G.H5.19
Van-der-waals TM3 Y 240 3x53 G.H5 Y 367 G.H5.19
Polar TM5 K 324 5x64 G.H5 R 360 G.H5.12
Polar ICL2 G 249 - G.S3 N 203 G.S3.02
Van-der-waals ICL2 G 249 - G.S3 N 203 G.S3.02
Polar TM7 I 395 7x60 G.H5 N 372 G.H5.24
Hydrophobic TM7 I 395 7x60 G.H5 N 372 G.H5.24
Van-der-waals TM7 I 395 7x60 G.H5 N 372 G.H5.24
Hydrophobic ICL2 G 249 - G.s2s3 K 201 G.s2s3.02
Van-der-waals ICL2 G 249 - G.s2s3 K 201 G.s2s3.02
Polar TM3 L 245 3x58 G.H5 R 360 G.H5.12
Hydrophobic TM3 L 245 3x58 G.H5 R 360 G.H5.12
Van-der-waals TM3 L 245 3x58 G.H5 R 360 G.H5.12
Polar TM5 R 328 5x68 G.h4s6 R 337 G.h4s6.19
Hydrophobic TM5 R 328 5x68 G.h4s6 R 337 G.h4s6.19
Van-der-waals TM5 R 328 5x68 G.h4s6 R 337 G.h4s6.19
Polar H8 N 396 8x47 G.H5 E 370 G.H5.22
Hydrophobic H8 N 396 8x47 G.H5 E 370 G.H5.22
Van-der-waals H8 N 396 8x47 G.H5 E 370 G.H5.22
Polar TM5 R 328 5x68 G.h4s6 R 335 G.h4s6.17
Van-der-waals TM5 R 328 5x68 G.h4s6 R 335 G.h4s6.17
Ionic TM5 K 324 5x64 G.H5 D 361 G.H5.13
Polar TM5 K 324 5x64 G.H5 D 361 G.H5.13
Hydrophobic TM5 K 324 5x64 G.H5 D 361 G.H5.13
Van-der-waals TM5 K 324 5x64 G.H5 D 361 G.H5.13
Polar TM6 R 341 6x40 G.H5 N 372 G.H5.24
Van-der-waals TM6 R 341 6x40 G.H5 N 372 G.H5.24
Van-der-waals ICL2 V 248 - G.s2s3 K 201 G.s2s3.02
Hydrophobic TM2 H 173 2x50 G.H5 I 371 G.H5.23
Polar TM6 S 342 6x41 G.H5 L 373 G.H5.25
Hydrophobic TM6 S 342 6x41 G.H5 L 373 G.H5.25
Van-der-waals TM6 S 342 6x41 G.H5 L 373 G.H5.25
Hydrophobic TM5 I 320 5x60 G.H5 L 364 G.H5.16
Van-der-waals TM5 I 320 5x60 G.H5 L 364 G.H5.16
Ionic ICL2 E 253 - G.HN K 37 G.HN.52
Polar ICL2 E 253 - G.HN K 37 G.HN.52
Hydrophobic ICL2 E 253 - G.HN K 37 G.HN.52
Van-der-waals ICL2 E 253 - G.HN K 37 G.HN.52
Hydrophobic TM3 L 244 3x57 G.H5 Y 367 G.H5.19
Van-der-waals TM3 L 244 3x57 G.H5 Y 367 G.H5.19
Hydrophobic TM5 L 321 5x61 G.H5 L 368 G.H5.20
Van-der-waals TM5 L 321 5x61 G.H5 L 368 G.H5.20
Hydrophobic TM5 L 325 5x65 G.H5 L 374 G.H5.26
Hydrophobic ICL2 S 251 - G.hns1 G 41 G.hns1.03
Polar C-term C 466 - G.hns1 R 40 G.hns1.02
Hydrophobic C-term C 466 - G.hns1 R 40 G.hns1.02
Van-der-waals C-term C 466 - G.hns1 R 40 G.hns1.02
Hydrophobic TM7 Y 392 7x57 G.H5 I 371 G.H5.23
Van-der-waals TM7 Y 392 7x57 G.H5 I 371 G.H5.23
Polar ICL2 G 249 - G.S3 T 202 G.S3.01
Hydrophobic ICL2 G 249 - G.S3 T 202 G.S3.01
Van-der-waals ICL2 G 249 - G.S3 T 202 G.S3.01
Hydrophobic TM3 L 241 3x54 G.H5 L 364 G.H5.16
Hydrophobic TM5 R 328 5x68 G.h4s6 R 338 G.h4s6.20
Van-der-waals TM5 R 328 5x68 G.h4s6 R 338 G.h4s6.20
Hydrophobic ICL2 V 248 - G.S1 L 43 G.S1.02
Van-der-waals ICL2 V 248 - G.S1 L 43 G.S1.02
Polar ICL2 G 250 - G.s2s3 K 201 G.s2s3.02
Polar ICL1 H 166 12x51 G.hns1 R 40 G.hns1.02
Polar H8 K 397 8x48 G.H5 N 372 G.H5.24
Hydrophobic H8 K 397 8x48 G.H5 N 372 G.H5.24
Van-der-waals H8 K 397 8x48 G.H5 N 372 G.H5.24
Ionic H8 K 397 8x48 G.H5 D 369 G.H5.21
Polar H8 K 397 8x48 G.H5 D 369 G.H5.21
Van-der-waals H8 K 397 8x48 G.H5 D 369 G.H5.21
Hydrophobic H8 N 396 8x47 G.H5 N 372 G.H5.24
Van-der-waals H8 N 396 8x47 G.H5 N 372 G.H5.24
Hydrophobic TM6 T 345 6x44 G.H5 L 373 G.H5.25
Van-der-waals TM6 T 345 6x44 G.H5 L 373 G.H5.25