G13 - GPR141 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

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Tertiary structure confidence

(pLDDT score) avg.: 79.1

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.5
iPTM Score: 0.2
PAE mean: 25.5


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic H8 K 292 8x51 G.H5 M 375 G.H5.24
Van-der-waals H8 K 292 8x51 G.H5 M 375 G.H5.24
Hydrophobic TM3 F 117 3x54 G.hns1 K 46 G.hns1.02
Van-der-waals TM3 F 117 3x54 G.hns1 K 46 G.hns1.02
Hydrophobic TM5 M 207 5x61 G.hns1 R 47 G.hns1.03
Van-der-waals TM5 M 207 5x61 G.hns1 R 47 G.hns1.03
Polar ICL2 K 123 34x53 G.H5 Q 373 G.H5.22
Hydrophobic ICL2 K 123 34x53 G.H5 Q 373 G.H5.22
Van-der-waals ICL2 K 123 34x53 G.H5 Q 373 G.H5.22
Polar ICL3 S 217 - G.s2s3 K 214 G.s2s3.01
Polar TM6 Q 219 6x29 G.H5 N 370 G.H5.19
Hydrophobic TM6 E 220 6x30 G.hns1 K 46 G.hns1.02
Van-der-waals TM6 E 220 6x30 G.hns1 K 46 G.hns1.02
Polar TM3 R 113 3x50 G.H5 M 375 G.H5.24
Van-der-waals TM3 R 113 3x50 G.H5 M 375 G.H5.24
Polar TM3 R 113 3x50 G.hns1 K 46 G.hns1.02
Van-der-waals TM3 R 113 3x50 G.hns1 K 46 G.hns1.02
Polar TM3 R 113 3x50 G.H5 Q 377 G.H5.26
Hydrophobic TM3 R 113 3x50 G.H5 Q 377 G.H5.26
Van-der-waals TM3 R 113 3x50 G.H5 Q 377 G.H5.26
Hydrophobic TM5 L 211 5x65 G.hns1 R 47 G.hns1.03
Van-der-waals TM5 L 211 5x65 G.hns1 R 47 G.hns1.03
Polar TM5 K 210 5x64 G.HN T 43 G.HN.52
Hydrophobic TM6 E 220 6x30 G.HN T 43 G.HN.52
Van-der-waals TM6 E 220 6x30 G.HN T 43 G.HN.52
Hydrophobic TM2 T 51 2x39 G.H5 Q 377 G.H5.26
Van-der-waals TM2 T 51 2x39 G.H5 Q 377 G.H5.26
Polar TM6 Q 219 6x29 G.H5 L 367 G.H5.16
Hydrophobic TM6 Q 219 6x29 G.H5 L 367 G.H5.16
Van-der-waals TM6 Q 219 6x29 G.H5 L 367 G.H5.16
Hydrophobic H8 K 292 8x51 G.H5 L 371 G.H5.20
Van-der-waals H8 K 292 8x51 G.H5 L 371 G.H5.20
Polar ICL3 S 214 - G.s2s3 N 215 G.s2s3.02
Hydrophobic ICL3 S 214 - G.s2s3 N 215 G.s2s3.02
Van-der-waals ICL3 S 214 - G.s2s3 N 215 G.s2s3.02
Polar TM6 Q 219 6x29 G.H5 L 371 G.H5.20
Hydrophobic TM6 Q 219 6x29 G.H5 L 371 G.H5.20
Van-der-waals TM6 Q 219 6x29 G.H5 L 371 G.H5.20
Polar ICL3 H 218 - G.hns1 R 47 G.hns1.03
Aromatic ICL3 H 218 - G.hns1 R 47 G.hns1.03
Hydrophobic ICL3 H 218 - G.hns1 R 47 G.hns1.03
Van-der-waals ICL3 H 218 - G.hns1 R 47 G.hns1.03
Hydrophobic TM6 Q 219 6x29 G.H5 L 374 G.H5.23
Van-der-waals TM6 Q 219 6x29 G.H5 L 374 G.H5.23
Polar TM3 I 116 3x53 G.hns1 K 46 G.hns1.02
Hydrophobic TM3 I 116 3x53 G.hns1 K 46 G.hns1.02
Van-der-waals TM3 I 116 3x53 G.hns1 K 46 G.hns1.02
Polar ICL2 C 120 34x50 G.HN K 42 G.HN.51
Hydrophobic ICL2 C 120 34x50 G.HN K 42 G.HN.51
Van-der-waals ICL2 C 120 34x50 G.HN K 42 G.HN.51
Hydrophobic ICL4 G 287 - G.H5 M 375 G.H5.24
Van-der-waals ICL4 G 287 - G.H5 M 375 G.H5.24
Hydrophobic TM3 F 117 3x54 G.HN T 43 G.HN.52
Van-der-waals TM3 F 117 3x54 G.HN T 43 G.HN.52
Ionic TM6 E 220 6x30 G.hns1 R 47 G.hns1.03
Polar TM6 E 220 6x30 G.hns1 R 47 G.hns1.03
Hydrophobic TM6 E 220 6x30 G.hns1 R 47 G.hns1.03
Van-der-waals TM6 E 220 6x30 G.hns1 R 47 G.hns1.03
Hydrophobic TM7 G 286 7x56 G.H5 M 375 G.H5.24
Van-der-waals TM7 G 286 7x56 G.H5 M 375 G.H5.24
Hydrophobic TM6 W 222 6x32 G.H5 L 371 G.H5.20
Polar TM3 K 119 3x56 G.HN K 42 G.HN.51
Hydrophobic TM3 K 119 3x56 G.HN K 42 G.HN.51
Van-der-waals TM3 K 119 3x56 G.HN K 42 G.HN.51
Polar ICL2 D 122 34x52 G.h2s4 S 239 G.h2s4.03
Hydrophobic ICL2 D 122 34x52 G.h2s4 S 239 G.h2s4.03
Van-der-waals ICL2 D 122 34x52 G.h2s4 S 239 G.h2s4.03
Hydrophobic ICL2 D 122 34x52 G.hns1 V 45 G.hns1.01
Polar ICL3 S 217 - G.s2s3 N 215 G.s2s3.02
Van-der-waals ICL3 S 217 - G.s2s3 N 215 G.s2s3.02
Polar TM5 K 210 5x64 G.HN R 40 G.HN.49
Van-der-waals TM5 K 210 5x64 G.HN R 40 G.HN.49
Hydrophobic ICL2 C 120 34x50 G.hns1 K 46 G.hns1.02
Hydrophobic TM6 Q 219 6x29 G.S3 V 216 G.S3.01
Polar ICL2 C 120 34x50 G.HN S 39 G.HN.48
Polar TM2 T 52 2x40 G.H5 L 376 G.H5.25
Hydrophobic TM2 T 51 2x39 G.H5 L 376 G.H5.25
Van-der-waals TM2 T 51 2x39 G.H5 L 376 G.H5.25
Hydrophobic ICL2 K 123 34x53 G.H5 Q 377 G.H5.26
Van-der-waals ICL2 K 123 34x53 G.H5 Q 377 G.H5.26
Polar ICL2 C 120 34x50 G.HN T 43 G.HN.52
Hydrophobic ICL2 C 120 34x50 G.HN T 43 G.HN.52
Van-der-waals ICL2 C 120 34x50 G.HN T 43 G.HN.52
Polar TM6 K 226 6x36 G.H5 M 375 G.H5.24
Hydrophobic TM6 K 226 6x36 G.H5 M 375 G.H5.24
Van-der-waals TM6 K 226 6x36 G.H5 M 375 G.H5.24
Hydrophobic ICL1 M 45 12x48 G.H5 L 376 G.H5.25
Van-der-waals ICL1 M 45 12x48 G.H5 L 376 G.H5.25
Polar ICL3 H 218 - G.s2s3 N 215 G.s2s3.02
Hydrophobic ICL3 H 218 - G.s2s3 N 215 G.s2s3.02
Van-der-waals ICL3 H 218 - G.s2s3 N 215 G.s2s3.02
Hydrophobic H8 H 289 8x48 G.H5 H 368 G.H5.17
Polar ICL1 N 46 12x49 G.h3s5 N 283 G.h3s5.02
Hydrophobic ICL1 N 46 12x49 G.h3s5 N 283 G.h3s5.02
Van-der-waals ICL1 N 46 12x49 G.h3s5 N 283 G.h3s5.02