Gt1 - GPR143 complex model

GPCR CLASS (FAMILY)

Other

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

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Tertiary structure confidence

(pLDDT score) avg.: 75.8

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.3
PAE mean: 21.4


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM3 V 144 3x53 G.H5 L 344 G.H5.20
Van-der-waals TM3 V 144 3x53 G.H5 L 344 G.H5.20
Polar C-term T 363 - G.H3 R 253 G.H3.16
Van-der-waals C-term T 363 - G.H3 R 253 G.H3.16
Polar TM6 N 234 6x21 G.H5 D 337 G.H5.13
Van-der-waals TM6 N 234 6x21 G.H5 D 337 G.H5.13
Hydrophobic TM6 M 238 6x25 G.H5 F 350 G.H5.26
Van-der-waals TM6 M 238 6x25 G.H5 F 350 G.H5.26
Hydrophobic TM6 V 241 6x28 G.H5 F 350 G.H5.26
Van-der-waals TM6 V 241 6x28 G.H5 F 350 G.H5.26
Hydrophobic TM6 I 242 6x29 G.H5 F 350 G.H5.26
Van-der-waals TM6 I 242 6x29 G.H5 F 350 G.H5.26
Polar TM6 R 245 6x32 G.H5 G 348 G.H5.24
Hydrophobic TM3 S 148 3x57 G.H5 I 340 G.H5.16
Polar TM3 Y 137 3x46 G.H5 L 349 G.H5.25
Hydrophobic TM3 Y 137 3x46 G.H5 L 349 G.H5.25
Van-der-waals TM3 Y 137 3x46 G.H5 L 349 G.H5.25
Hydrophobic C-term M 370 - G.H3 H 252 G.H3.15
Van-der-waals C-term M 370 - G.H3 H 252 G.H3.15
Hydrophobic ICL2 L 151 - G.hns1 A 27 G.hns1.02
Ionic C-term R 324 - G.h4s6 D 311 G.h4s6.09
Polar C-term R 324 - G.h4s6 D 311 G.h4s6.09
Van-der-waals C-term R 324 - G.h4s6 D 311 G.h4s6.09
Ionic C-term E 366 - G.H3 R 253 G.H3.16
Polar C-term E 366 - G.H3 R 253 G.H3.16
Hydrophobic C-term E 366 - G.H3 R 253 G.H3.16
Van-der-waals C-term E 366 - G.H3 R 253 G.H3.16
Hydrophobic TM6 N 234 6x21 G.H5 A 334 G.H5.10
Polar C-term T 363 - G.H3 Y 254 G.H3.17
Van-der-waals C-term T 363 - G.H3 Y 254 G.H3.17
Hydrophobic ICL1 P 65 - G.H5 C 347 G.H5.23
Van-der-waals ICL1 P 65 - G.H5 C 347 G.H5.23
Polar TM3 S 148 3x57 G.s2s3 K 188 G.s2s3.01
Hydrophobic TM3 S 148 3x57 G.s2s3 K 188 G.s2s3.01
Van-der-waals TM3 S 148 3x57 G.s2s3 K 188 G.s2s3.01
Hydrophobic C-term W 329 - G.h4s6 M 308 G.h4s6.03
Van-der-waals C-term W 329 - G.h4s6 M 308 G.h4s6.03
Hydrophobic ICL3 Y 231 - G.H5 K 341 G.H5.17
Van-der-waals ICL3 Y 231 - G.H5 K 341 G.H5.17
Polar C-term S 372 - G.H2 K 205 G.H2.05
Hydrophobic C-term S 372 - G.H2 K 205 G.H2.05
Van-der-waals C-term S 372 - G.H2 K 205 G.H2.05
Hydrophobic C-term L 371 - G.h2s4 F 211 G.h2s4.01
Polar TM6 M 238 6x25 G.H5 K 341 G.H5.17
Hydrophobic TM6 M 238 6x25 G.H5 K 341 G.H5.17
Van-der-waals TM6 M 238 6x25 G.H5 K 341 G.H5.17
Polar TM2 S 67 2x39 G.H5 C 347 G.H5.23
Hydrophobic TM2 S 67 2x39 G.H5 C 347 G.H5.23
Van-der-waals TM2 S 67 2x39 G.H5 C 347 G.H5.23
Polar TM2 V 68 2x40 G.H5 C 347 G.H5.23
Hydrophobic TM2 V 68 2x40 G.H5 C 347 G.H5.23
Van-der-waals TM2 V 68 2x40 G.H5 C 347 G.H5.23
Hydrophobic TM3 V 144 3x53 G.H5 I 340 G.H5.16
Van-der-waals TM3 V 144 3x53 G.H5 I 340 G.H5.16
Hydrophobic ICL1 P 65 - G.H5 D 346 G.H5.22
Van-der-waals ICL1 P 65 - G.H5 D 346 G.H5.22
Hydrophobic TM2 L 71 2x43 G.H5 L 349 G.H5.25
Hydrophobic TM2 L 71 2x43 G.H5 G 348 G.H5.24
Van-der-waals TM2 L 71 2x43 G.H5 G 348 G.H5.24
Hydrophobic TM3 S 148 3x57 G.S3 L 190 G.S3.01
Ionic TM6 R 237 6x24 G.h4s6 E 314 G.h4s6.12
Polar TM6 R 237 6x24 G.h4s6 E 314 G.h4s6.12
Hydrophobic TM6 R 237 6x24 G.h4s6 E 314 G.h4s6.12
Van-der-waals TM6 R 237 6x24 G.h4s6 E 314 G.h4s6.12
Hydrophobic TM6 M 238 6x25 G.S6 Y 316 G.S6.02
Van-der-waals TM6 M 238 6x25 G.S6 Y 316 G.S6.02
Hydrophobic TM6 M 238 6x25 G.H5 K 345 G.H5.21
Van-der-waals TM6 M 238 6x25 G.H5 K 345 G.H5.21
Hydrophobic C-term L 368 - G.H2 K 205 G.H2.05
Hydrophobic C-term A 367 - G.H3 H 252 G.H3.15
Hydrophobic TM3 A 141 3x50 G.H5 L 349 G.H5.25
Hydrophobic C-term L 371 - G.H2 R 204 G.H2.04
Van-der-waals C-term L 371 - G.H2 R 204 G.H2.04
Polar TM6 R 245 6x32 G.H5 L 349 G.H5.25
Hydrophobic TM6 R 245 6x32 G.H5 L 349 G.H5.25
Van-der-waals TM6 R 245 6x32 G.H5 L 349 G.H5.25
Hydrophobic TM2 V 68 2x40 G.H5 G 348 G.H5.24
Van-der-waals TM2 V 68 2x40 G.H5 G 348 G.H5.24
Hydrophobic TM6 E 235 6x22 G.S6 Y 316 G.S6.02
Van-der-waals TM6 E 235 6x22 G.S6 Y 316 G.S6.02
Hydrophobic C-term A 367 - G.H2 I 208 G.H2.08
Van-der-waals C-term A 367 - G.H2 I 208 G.H2.08
Hydrophobic C-term A 367 - G.H3 Y 254 G.H3.17
Hydrophobic ICL2 L 151 - G.HN E 24 G.HN.52
Hydrophobic C-term L 371 - G.H2 W 207 G.H2.07
Van-der-waals C-term L 371 - G.H2 W 207 G.H2.07
Hydrophobic TM6 M 238 6x25 G.H5 E 342 G.H5.18
Polar TM3 S 148 3x57 G.s2s3 D 189 G.s2s3.02
Hydrophobic TM3 S 148 3x57 G.s2s3 D 189 G.s2s3.02
Van-der-waals TM3 S 148 3x57 G.s2s3 D 189 G.s2s3.02
Ionic TM6 E 235 6x22 G.S6 H 318 G.S6.04
Hydrophobic ICL2 G 150 - G.hns1 R 28 G.hns1.03
Polar ICL3 Y 231 - G.H5 D 337 G.H5.13
Polar TM6 R 245 6x32 G.H5 F 350 G.H5.26
Hydrophobic TM6 R 245 6x32 G.H5 F 350 G.H5.26
Van-der-waals TM6 R 245 6x32 G.H5 F 350 G.H5.26
Hydrophobic C-term L 371 - G.H2 I 208 G.H2.08
Polar TM2 S 67 2x39 G.H5 L 349 G.H5.25
Hydrophobic TM2 S 67 2x39 G.H5 L 349 G.H5.25
Van-der-waals TM2 S 67 2x39 G.H5 L 349 G.H5.25
Hydrophobic TM6 E 235 6x22 G.H5 I 338 G.H5.14
Van-der-waals TM6 E 235 6x22 G.H5 I 338 G.H5.14