Gi1 - GPR174 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

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Tertiary structure confidence

(pLDDT score) avg.: 83.2

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 13.8


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM6 M 231 6x36 G.H5 G 352 G.H5.24
Van-der-waals TM6 M 231 6x36 G.H5 G 352 G.H5.24
Polar ICL2 C 129 34x56 G.HN E 28 G.HN.52
Hydrophobic ICL2 C 129 34x56 G.HN E 28 G.HN.52
Van-der-waals ICL2 C 129 34x56 G.HN E 28 G.HN.52
Polar ICL2 P 123 34x50 G.H5 N 347 G.H5.19
Hydrophobic ICL3 A 219 - G.h4s6 E 318 G.h4s6.12
Van-der-waals ICL3 A 219 - G.h4s6 E 318 G.h4s6.12
Polar H8 N 297 8x48 G.H5 F 354 G.H5.26
Hydrophobic H8 N 297 8x48 G.H5 F 354 G.H5.26
Van-der-waals H8 N 297 8x48 G.H5 F 354 G.H5.26
Hydrophobic ICL3 Y 216 - G.H5 I 344 G.H5.16
Van-der-waals ICL3 Y 216 - G.H5 I 344 G.H5.16
Polar ICL3 A 219 - G.H5 D 341 G.H5.13
Van-der-waals ICL3 A 219 - G.H5 D 341 G.H5.13
Polar ICL1 R 53 - G.H5 N 346 G.H5.18
Van-der-waals ICL1 R 53 - G.H5 N 346 G.H5.18
Hydrophobic TM6 A 228 6x33 G.H5 F 354 G.H5.26
Van-der-waals TM6 A 228 6x33 G.H5 F 354 G.H5.26
Hydrophobic TM2 V 55 2x40 G.H5 D 350 G.H5.22
Van-der-waals TM2 V 55 2x40 G.H5 D 350 G.H5.22
Hydrophobic TM3 F 119 3x53 G.H5 L 348 G.H5.20
Hydrophobic TM2 M 58 2x43 G.H5 C 351 G.H5.23
Van-der-waals TM2 M 58 2x43 G.H5 C 351 G.H5.23
Hydrophobic TM6 E 224 6x29 G.H5 F 354 G.H5.26
Van-der-waals TM6 E 224 6x29 G.H5 F 354 G.H5.26
Hydrophobic ICL3 Y 216 - G.H5 T 340 G.H5.12
Van-der-waals ICL3 Y 216 - G.H5 T 340 G.H5.12
Hydrophobic ICL2 H 127 34x54 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 H 127 34x54 G.hns1 A 31 G.hns1.02
Hydrophobic TM2 M 58 2x43 G.H5 G 352 G.H5.24
Van-der-waals TM2 M 58 2x43 G.H5 G 352 G.H5.24
Polar ICL2 F 124 34x51 G.hns1 R 32 G.hns1.03
Ionic H8 E 298 8x49 G.H5 K 349 G.H5.21
Polar H8 E 298 8x49 G.H5 K 349 G.H5.21
Hydrophobic H8 E 298 8x49 G.H5 K 349 G.H5.21
Van-der-waals H8 E 298 8x49 G.H5 K 349 G.H5.21
Aromatic ICL2 F 124 34x51 G.H5 F 336 G.H5.08
Hydrophobic ICL2 F 124 34x51 G.H5 F 336 G.H5.08
Van-der-waals ICL2 F 124 34x51 G.H5 F 336 G.H5.08
Hydrophobic TM3 R 116 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 116 3x50 G.H5 L 353 G.H5.25
Ionic TM4 K 132 4x40 G.HN D 20 G.HN.44
Ionic H8 R 301 8x52 G.h3s5 D 261 G.h3s5.02
Polar H8 R 301 8x52 G.h3s5 D 261 G.h3s5.02
Van-der-waals H8 R 301 8x52 G.h3s5 D 261 G.h3s5.02
Polar TM3 R 116 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 116 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 116 3x50 G.H5 C 351 G.H5.23
Hydrophobic ICL2 F 124 34x51 G.H5 I 343 G.H5.15
Hydrophobic ICL2 P 123 34x50 G.H5 I 343 G.H5.15
Ionic ICL1 R 53 - G.H5 D 350 G.H5.22
Polar ICL1 R 53 - G.H5 D 350 G.H5.22
Hydrophobic ICL1 R 53 - G.H5 D 350 G.H5.22
Van-der-waals ICL1 R 53 - G.H5 D 350 G.H5.22
Van-der-waals TM6 K 227 6x32 G.H5 F 354 G.H5.26
Polar TM1 Y 47 1x60 G.H5 D 350 G.H5.22
Van-der-waals TM1 Y 47 1x60 G.H5 D 350 G.H5.22
Hydrophobic TM3 L 120 3x54 G.H5 I 344 G.H5.16
Hydrophobic TM6 M 231 6x36 G.H5 L 353 G.H5.25
Van-der-waals TM6 M 231 6x36 G.H5 L 353 G.H5.25
Hydrophobic ICL2 P 123 34x50 G.H5 T 340 G.H5.12
Hydrophobic ICL2 F 124 34x51 G.H5 T 340 G.H5.12
Van-der-waals ICL2 F 124 34x51 G.H5 T 340 G.H5.12
Polar ICL3 D 221 - G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL3 D 221 - G.h4s6 E 318 G.h4s6.12
Van-der-waals ICL3 D 221 - G.h4s6 E 318 G.h4s6.12
Polar ICL2 C 129 34x56 G.HN R 24 G.HN.48
Hydrophobic ICL2 C 129 34x56 G.HN R 24 G.HN.48
Van-der-waals ICL2 C 129 34x56 G.HN R 24 G.HN.48
Hydrophobic TM2 M 58 2x43 G.H5 D 350 G.H5.22
Van-der-waals TM2 M 58 2x43 G.H5 D 350 G.H5.22
Hydrophobic ICL2 P 123 34x50 G.H5 I 344 G.H5.16
Van-der-waals ICL2 P 123 34x50 G.H5 I 344 G.H5.16
Polar ICL2 H 127 34x54 G.HN E 28 G.HN.52
Hydrophobic ICL2 H 127 34x54 G.HN E 28 G.HN.52
Van-der-waals ICL2 H 127 34x54 G.HN E 28 G.HN.52
Hydrophobic TM6 I 232 6x37 G.H5 L 353 G.H5.25
Van-der-waals TM6 I 232 6x37 G.H5 L 353 G.H5.25
Hydrophobic ICL3 M 218 - G.H5 D 341 G.H5.13
Van-der-waals ICL3 M 218 - G.H5 D 341 G.H5.13
Ionic TM6 E 224 6x29 G.H5 K 345 G.H5.17
Polar TM6 E 224 6x29 G.H5 K 345 G.H5.17
Hydrophobic TM6 E 224 6x29 G.H5 K 345 G.H5.17
Van-der-waals TM6 E 224 6x29 G.H5 K 345 G.H5.17
Polar TM3 R 116 3x50 G.H5 G 352 G.H5.24
Hydrophobic TM6 A 228 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 A 228 6x33 G.H5 L 353 G.H5.25
Hydrophobic ICL3 Y 216 - G.H5 D 341 G.H5.13
Van-der-waals ICL3 Y 216 - G.H5 D 341 G.H5.13
Polar ICL2 H 127 34x54 G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 H 127 34x54 G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 H 127 34x54 G.hns1 R 32 G.hns1.03
Hydrophobic H8 T 296 8x47 G.H5 F 354 G.H5.26
Van-der-waals H8 T 296 8x47 G.H5 F 354 G.H5.26
Hydrophobic TM3 R 116 3x50 G.H5 L 348 G.H5.20
Polar H8 E 298 8x49 G.H5 F 354 G.H5.26
Hydrophobic TM3 F 119 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 F 119 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 F 119 3x53 G.H5 D 350 G.H5.22
Hydrophobic TM3 F 119 3x53 G.H5 C 351 G.H5.23
Van-der-waals TM3 F 119 3x53 G.H5 C 351 G.H5.23
Polar ICL3 Q 220 - G.h4s6 E 318 G.h4s6.12
Van-der-waals ICL3 Q 220 - G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL3 A 219 - G.S6 Y 320 G.S6.02
Hydrophobic H8 T 296 8x47 G.H5 G 352 G.H5.24
Van-der-waals H8 T 296 8x47 G.H5 G 352 G.H5.24
Hydrophobic ICL2 F 124 34x51 G.S3 L 194 G.S3.01
Van-der-waals ICL2 F 124 34x51 G.S3 L 194 G.S3.01
Hydrophobic TM3 L 120 3x54 G.H5 L 348 G.H5.20
Hydrophobic TM4 K 132 4x40 G.HN R 24 G.HN.48
Polar ICL1 R 53 - G.H5 N 347 G.H5.19
Hydrophobic TM3 R 115 3x49 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 115 3x49 G.H5 C 351 G.H5.23