G13 - GPR25 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 78.7

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.6
PAE mean: 15.8


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM3 V 141 3x54 G.H5 L 374 G.H5.23
Hydrophobic TM5 L 229 5x65 G.H5 L 367 G.H5.16
Polar H8 S 313 8x49 G.H5 L 376 G.H5.25
Hydrophobic H8 S 313 8x49 G.H5 L 376 G.H5.25
Van-der-waals H8 S 313 8x49 G.H5 L 376 G.H5.25
Polar ICL2 R 148 34x54 G.hns1 K 46 G.hns1.02
Hydrophobic ICL2 R 148 34x54 G.hns1 K 46 G.hns1.02
Van-der-waals ICL2 R 148 34x54 G.hns1 K 46 G.hns1.02
Polar ICL2 R 148 34x54 G.S1 L 48 G.S1.01
Van-der-waals ICL2 R 148 34x54 G.S1 L 48 G.S1.01
Polar TM3 A 140 3x53 G.H5 N 370 G.H5.19
Hydrophobic TM3 A 140 3x53 G.H5 N 370 G.H5.19
Van-der-waals TM3 A 140 3x53 G.H5 N 370 G.H5.19
Hydrophobic H8 S 313 8x49 G.H5 Q 377 G.H5.26
Hydrophobic ICL2 L 145 34x51 G.H5 F 359 G.H5.08
Hydrophobic ICL2 P 149 34x55 G.HN T 43 G.HN.52
Van-der-waals ICL2 P 149 34x55 G.HN T 43 G.HN.52
Hydrophobic ICL3 V 235 - G.H5 D 364 G.H5.13
Van-der-waals ICL3 V 235 - G.H5 D 364 G.H5.13
Hydrophobic TM3 A 140 3x53 G.H5 L 374 G.H5.23
Van-der-waals TM3 A 140 3x53 G.H5 L 374 G.H5.23
Hydrophobic TM6 N 241 6x32 G.H5 M 375 G.H5.24
Hydrophobic ICL3 P 232 - G.H5 L 367 G.H5.16
Hydrophobic H8 D 311 8x47 G.H5 L 376 G.H5.25
Van-der-waals H8 D 311 8x47 G.H5 L 376 G.H5.25
Polar ICL2 R 151 34x57 G.H5 N 370 G.H5.19
Van-der-waals ICL2 R 151 34x57 G.H5 N 370 G.H5.19
Hydrophobic ICL2 R 148 34x54 G.h2s4 T 241 G.h2s4.05
Van-der-waals ICL2 R 148 34x54 G.h2s4 T 241 G.h2s4.05
Hydrophobic TM2 R 72 2x37 G.H5 L 376 G.H5.25
Van-der-waals TM2 R 72 2x37 G.H5 L 376 G.H5.25
Hydrophobic TM3 V 141 3x54 G.H5 L 367 G.H5.16
Hydrophobic TM6 I 245 6x36 G.H5 M 375 G.H5.24
Hydrophobic ICL3 P 232 - G.H5 D 364 G.H5.13
Hydrophobic ICL3 V 235 - G.H5 L 371 G.H5.20
Van-der-waals ICL3 V 235 - G.H5 L 371 G.H5.20
Hydrophobic TM6 R 239 6x30 G.H5 M 375 G.H5.24
Van-der-waals TM6 R 239 6x30 G.H5 M 375 G.H5.24
Hydrophobic ICL2 P 149 34x55 G.hns1 R 47 G.hns1.03
Van-der-waals ICL2 P 149 34x55 G.hns1 R 47 G.hns1.03
Hydrophobic ICL2 L 145 34x51 G.S1 V 49 G.S1.02
Van-der-waals ICL2 L 145 34x51 G.S1 V 49 G.S1.02
Hydrophobic TM3 R 137 3x50 G.H5 L 374 G.H5.23
Hydrophobic ICL3 V 235 - G.H5 L 367 G.H5.16
Hydrophobic TM6 A 238 6x29 G.H5 M 375 G.H5.24
Van-der-waals TM6 A 238 6x29 G.H5 M 375 G.H5.24
Hydrophobic ICL2 R 148 34x54 G.H5 I 366 G.H5.15
Van-der-waals ICL2 R 148 34x54 G.H5 I 366 G.H5.15
Hydrophobic ICL2 L 144 34x50 G.H5 L 367 G.H5.16
Van-der-waals ICL2 L 144 34x50 G.H5 L 367 G.H5.16
Hydrophobic ICL2 L 145 34x51 G.S3 V 216 G.S3.01
Hydrophobic TM2 V 74 2x39 G.H5 L 374 G.H5.23
Van-der-waals TM2 V 74 2x39 G.H5 L 374 G.H5.23
Hydrophobic TM3 V 141 3x54 G.H5 L 371 G.H5.20
Hydrophobic ICL2 L 145 34x51 G.H5 K 363 G.H5.12
Hydrophobic TM6 S 242 6x33 G.H5 M 375 G.H5.24
Van-der-waals TM6 S 242 6x33 G.H5 M 375 G.H5.24
Hydrophobic TM7 Y 307 7x53 G.H5 L 376 G.H5.25
Hydrophobic TM2 V 74 2x39 G.H5 L 376 G.H5.25
Hydrophobic ICL2 L 145 34x51 G.H5 I 366 G.H5.15
Van-der-waals ICL2 L 145 34x51 G.H5 I 366 G.H5.15
Hydrophobic ICL2 L 144 34x50 G.H5 I 366 G.H5.15
Polar TM2 R 72 2x37 G.H5 Q 377 G.H5.26
Van-der-waals TM2 R 72 2x37 G.H5 Q 377 G.H5.26
Hydrophobic ICL2 R 148 34x54 G.hns1 R 47 G.hns1.03
Hydrophobic TM5 L 229 5x65 G.H5 L 371 G.H5.20
Hydrophobic TM4 T 152 4x38 G.hns1 K 46 G.hns1.02
Van-der-waals TM4 T 152 4x38 G.hns1 K 46 G.hns1.02
Hydrophobic TM6 S 242 6x33 G.H5 L 371 G.H5.20
Polar H8 R 312 8x48 G.H5 L 376 G.H5.25