Ggust - GPR3 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 79.3

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.4
PAE mean: 19.6


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar ICL2 L 142 34x51 G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 L 142 34x51 G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 L 142 34x51 G.hns1 R 32 G.hns1.03
Hydrophobic TM6 H 238 6x26 G.S6 Y 320 G.S6.02
Polar TM4 T 148 4x37 G.HN E 28 G.HN.52
Hydrophobic TM4 T 148 4x37 G.HN E 28 G.HN.52
Van-der-waals TM4 T 148 4x37 G.HN E 28 G.HN.52
Polar TM3 S 137 3x53 G.H5 C 351 G.H5.23
Hydrophobic TM3 S 137 3x53 G.H5 C 351 G.H5.23
Van-der-waals TM3 S 137 3x53 G.H5 C 351 G.H5.23
Hydrophobic TM3 L 138 3x54 G.H5 I 344 G.H5.16
Hydrophobic TM5 V 220 5x65 G.H5 L 348 G.H5.20
Van-der-waals TM5 V 220 5x65 G.H5 L 348 G.H5.20
Polar TM3 R 134 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 134 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 134 3x50 G.H5 C 351 G.H5.23
Hydrophobic ICL2 T 143 34x52 G.hns1 A 31 G.hns1.02
Hydrophobic TM3 R 134 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 134 3x50 G.H5 L 353 G.H5.25
Hydrophobic TM6 L 234 6x22 G.S6 H 322 G.S6.04
Polar ICL2 Y 144 34x53 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 Y 144 34x53 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 Y 144 34x53 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 A 141 34x50 G.S3 L 194 G.S3.01
Van-der-waals ICL2 A 141 34x50 G.S3 L 194 G.S3.01
Polar TM5 Q 230 5x75 G.H5 D 337 G.H5.09
Hydrophobic TM5 Q 230 5x75 G.H5 D 337 G.H5.09
Van-der-waals TM5 Q 230 5x75 G.H5 D 337 G.H5.09
Polar ICL2 A 141 34x50 G.H5 N 347 G.H5.19
Van-der-waals ICL2 A 141 34x50 G.H5 N 347 G.H5.19
Hydrophobic TM2 M 75 2x39 G.H5 D 350 G.H5.22
Van-der-waals TM2 M 75 2x39 G.H5 D 350 G.H5.22
Ionic TM6 H 238 6x26 G.h4s6 E 318 G.h4s6.12
Polar ICL2 Y 145 34x54 G.H5 D 350 G.H5.22
Polar TM4 S 146 4x35 G.HN A 27 G.HN.51
Hydrophobic TM4 S 146 4x35 G.HN A 27 G.HN.51
Van-der-waals TM4 S 146 4x35 G.HN A 27 G.HN.51
Hydrophobic TM3 L 138 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 L 138 3x54 G.H5 L 348 G.H5.20
Hydrophobic TM6 T 242 6x30 G.H5 F 354 G.H5.26
Hydrophobic TM6 G 245 6x33 G.H5 F 354 G.H5.26
Van-der-waals TM6 G 245 6x33 G.H5 F 354 G.H5.26
Polar TM3 R 134 3x50 G.H5 G 352 G.H5.24
Hydrophobic TM3 R 134 3x50 G.H5 G 352 G.H5.24
Hydrophobic TM6 A 241 6x29 G.H5 K 345 G.H5.17
Polar TM5 Q 230 5x75 G.H5 F 334 G.H5.06
Hydrophobic TM5 Q 230 5x75 G.H5 F 334 G.H5.06
Van-der-waals TM5 Q 230 5x75 G.H5 F 334 G.H5.06
Aromatic TM6 H 238 6x26 G.H5 K 345 G.H5.17
Hydrophobic TM6 H 238 6x26 G.H5 K 345 G.H5.17
Polar ICL2 L 142 34x51 G.S1 V 34 G.S1.02
Hydrophobic ICL2 L 142 34x51 G.S1 V 34 G.S1.02
Van-der-waals ICL2 L 142 34x51 G.S1 V 34 G.S1.02
Hydrophobic TM2 M 75 2x39 G.H5 C 351 G.H5.23
Van-der-waals TM2 M 75 2x39 G.H5 C 351 G.H5.23
Van-der-waals TM4 T 148 4x37 G.hns1 A 31 G.hns1.02
Hydrophobic TM3 N 140 3x56 G.S3 L 194 G.S3.01
Polar ICL2 L 142 34x51 G.S1 T 33 G.S1.01
Hydrophobic ICL2 L 142 34x51 G.S1 T 33 G.S1.01
Van-der-waals ICL2 L 142 34x51 G.S1 T 33 G.S1.01
Polar C-term R 325 - G.H3 K 257 G.H3.16
Van-der-waals C-term R 325 - G.H3 K 257 G.H3.16
Hydrophobic C-term S 324 - G.H3 K 257 G.H3.16
Van-der-waals C-term S 324 - G.H3 K 257 G.H3.16
Polar TM5 Q 226 5x71 G.s2s3 K 192 G.s2s3.01
Hydrophobic TM5 Q 226 5x71 G.s2s3 K 192 G.s2s3.01
Van-der-waals TM5 Q 226 5x71 G.s2s3 K 192 G.s2s3.01
Hydrophobic C-term V 330 - G.H3 S 252 G.H3.11
Van-der-waals C-term V 330 - G.H3 S 252 G.H3.11
Polar ICL2 Y 145 34x54 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 Y 145 34x54 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 Y 145 34x54 G.hns1 A 31 G.hns1.02
Ionic TM5 H 223 5x68 G.H5 D 341 G.H5.13
Polar TM5 H 223 5x68 G.H5 D 341 G.H5.13
Hydrophobic TM5 H 223 5x68 G.H5 D 341 G.H5.13
Van-der-waals TM5 H 223 5x68 G.H5 D 341 G.H5.13
Hydrophobic ICL2 L 142 34x51 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 L 142 34x51 G.hns1 A 31 G.hns1.02
Polar TM4 S 146 4x35 G.HN E 28 G.HN.52
Hydrophobic TM4 S 146 4x35 G.HN E 28 G.HN.52
Van-der-waals TM4 S 146 4x35 G.HN E 28 G.HN.52
Hydrophobic TM5 V 220 5x65 G.H5 F 354 G.H5.26
Polar TM5 H 223 5x68 G.s2s3 K 192 G.s2s3.01
Hydrophobic TM5 H 223 5x68 G.s2s3 K 192 G.s2s3.01
Polar TM5 Q 230 5x75 G.H5 A 338 G.H5.10
Polar TM5 I 227 5x72 G.H5 D 341 G.H5.13
Hydrophobic TM5 I 227 5x72 G.H5 D 341 G.H5.13
Van-der-waals TM5 I 227 5x72 G.H5 D 341 G.H5.13
Hydrophobic TM6 H 238 6x26 G.H5 I 342 G.H5.14
Hydrophobic ICL2 L 142 34x51 G.S3 L 194 G.S3.01
Van-der-waals ICL2 L 142 34x51 G.S3 L 194 G.S3.01
Hydrophobic ICL2 L 142 34x51 G.S3 H 195 G.S3.02
Van-der-waals ICL2 L 142 34x51 G.S3 H 195 G.S3.02
Polar ICL2 T 143 34x52 G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 T 143 34x52 G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 T 143 34x52 G.hns1 R 32 G.hns1.03
Hydrophobic TM4 E 147 4x36 G.HN A 27 G.HN.51
Hydrophobic TM4 S 146 4x35 G.hns1 D 30 G.hns1.01
Hydrophobic ICL2 L 142 34x51 G.S3 F 196 G.S3.03
Hydrophobic TM6 A 241 6x29 G.H5 F 354 G.H5.26
Van-der-waals TM6 A 241 6x29 G.H5 F 354 G.H5.26
Hydrophobic TM6 L 249 6x37 G.H5 L 353 G.H5.25
Van-der-waals TM6 L 249 6x37 G.H5 L 353 G.H5.25
Hydrophobic TM5 H 223 5x68 G.H5 I 344 G.H5.16
Van-der-waals TM5 H 223 5x68 G.H5 I 344 G.H5.16
Hydrophobic ICL2 A 141 34x50 G.H5 I 344 G.H5.16
Polar TM4 S 146 4x35 G.hns1 A 31 G.hns1.02
Hydrophobic TM4 S 146 4x35 G.hns1 A 31 G.hns1.02
Van-der-waals TM4 S 146 4x35 G.hns1 A 31 G.hns1.02