Gt1 - GPR62 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 80.5

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 12.1


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic C-term L 326 - G.H3 H 252 G.H3.15
Van-der-waals C-term L 326 - G.H3 H 252 G.H3.15
Polar TM3 L 116 3x53 G.H5 N 343 G.H5.19
Hydrophobic TM3 L 116 3x53 G.H5 N 343 G.H5.19
Van-der-waals TM3 L 116 3x53 G.H5 N 343 G.H5.19
Hydrophobic TM5 V 198 5x64 G.H5 I 340 G.H5.16
Van-der-waals TM5 V 198 5x64 G.H5 I 340 G.H5.16
Hydrophobic C-term P 333 - G.H2 R 201 G.H2.01
Hydrophobic TM6 A 242 6x36 G.H5 L 349 G.H5.25
Van-der-waals TM6 A 242 6x36 G.H5 L 349 G.H5.25
Hydrophobic C-term P 334 - G.H3 H 244 G.H3.07
Van-der-waals C-term P 334 - G.H3 H 244 G.H3.07
Hydrophobic ICL2 P 123 - G.S3 L 190 G.S3.01
Van-der-waals ICL2 P 123 - G.S3 L 190 G.S3.01
Hydrophobic TM5 I 195 5x61 G.H5 L 349 G.H5.25
Van-der-waals TM5 I 195 5x61 G.H5 L 349 G.H5.25
Hydrophobic C-term L 326 - G.h2s4 F 211 G.h2s4.01
Van-der-waals C-term L 326 - G.h2s4 F 211 G.h2s4.01
Polar TM2 R 46 2x38 G.hns1 A 27 G.hns1.02
Hydrophobic TM2 R 46 2x38 G.hns1 A 27 G.hns1.02
Van-der-waals TM2 R 46 2x38 G.hns1 A 27 G.hns1.02
Ionic TM5 R 205 5x71 G.H5 D 337 G.H5.13
Polar TM5 R 205 5x71 G.H5 D 337 G.H5.13
Hydrophobic TM5 R 205 5x71 G.H5 D 337 G.H5.13
Van-der-waals TM5 R 205 5x71 G.H5 D 337 G.H5.13
Hydrophobic C-term P 334 - G.H2 R 201 G.H2.01
Van-der-waals C-term P 334 - G.H2 R 201 G.H2.01
Hydrophobic ICL3 L 215 - G.hgh4 D 285 G.hgh4.04
Van-der-waals ICL3 L 215 - G.hgh4 D 285 G.hgh4.04
Hydrophobic C-term P 334 - G.s4h3 V 236 G.s4h3.14
Hydrophobic ICL3 L 227 - G.h4s6 M 308 G.h4s6.03
Van-der-waals ICL3 L 227 - G.h4s6 M 308 G.h4s6.03
Hydrophobic ICL2 L 121 - G.S3 L 190 G.S3.01
Van-der-waals ICL2 L 121 - G.S3 L 190 G.S3.01
Hydrophobic TM5 A 203 5x69 G.H5 F 350 G.H5.26
Hydrophobic ICL2 P 123 - G.hns1 R 28 G.hns1.03
Hydrophobic TM5 A 202 5x68 G.H5 I 340 G.H5.16
Hydrophobic ICL2 G 124 - G.hns1 R 28 G.hns1.03
Polar TM2 R 46 2x38 G.H5 N 343 G.H5.19
Van-der-waals TM2 R 46 2x38 G.H5 N 343 G.H5.19
Hydrophobic H8 Q 294 8x47 G.H5 C 347 G.H5.23
Polar C-term C 329 - G.H3 S 248 G.H3.11
Hydrophobic C-term C 329 - G.H3 S 248 G.H3.11
Hydrophobic TM5 A 202 5x68 G.H5 L 344 G.H5.20
Hydrophobic C-term L 327 - G.H2 K 205 G.H2.05
Van-der-waals C-term L 327 - G.H2 K 205 G.H2.05
Hydrophobic C-term L 330 - G.H2 W 207 G.H2.07
Polar ICL3 S 217 - G.H4 E 305 G.H4.17
Hydrophobic C-term P 323 - G.H2 I 208 G.H2.08
Van-der-waals C-term P 323 - G.H2 I 208 G.H2.08
Ionic H8 R 295 8x48 G.H5 D 346 G.H5.22
Polar H8 R 295 8x48 G.H5 D 346 G.H5.22
Hydrophobic H8 R 295 8x48 G.H5 D 346 G.H5.22
Van-der-waals H8 R 295 8x48 G.H5 D 346 G.H5.22
Polar C-term Q 319 - G.H3 Y 254 G.H3.17
Van-der-waals C-term Q 319 - G.H3 Y 254 G.H3.17
Polar TM6 A 239 6x33 G.H5 L 349 G.H5.25
Van-der-waals TM6 A 239 6x33 G.H5 L 349 G.H5.25
Hydrophobic TM3 R 113 3x50 G.H5 C 347 G.H5.23
Hydrophobic ICL2 L 121 - G.s2s3 K 188 G.s2s3.01
Van-der-waals ICL2 L 121 - G.s2s3 K 188 G.s2s3.01
Aromatic C-term W 321 - G.h2s4 F 211 G.h2s4.01
Hydrophobic C-term W 321 - G.h2s4 F 211 G.h2s4.01
Van-der-waals C-term W 321 - G.h2s4 F 211 G.h2s4.01
Polar C-term Q 331 - G.H2 K 205 G.H2.05
Hydrophobic C-term Q 331 - G.H2 K 205 G.H2.05
Van-der-waals C-term Q 331 - G.H2 K 205 G.H2.05
Hydrophobic ICL2 P 120 - G.H5 I 340 G.H5.16
Van-der-waals ICL2 P 120 - G.H5 I 340 G.H5.16
Hydrophobic H8 P 296 8x49 G.H5 D 346 G.H5.22
Van-der-waals H8 P 296 8x49 G.H5 D 346 G.H5.22
Van-der-waals TM3 I 117 3x54 G.H5 I 340 G.H5.16
Hydrophobic H8 R 295 8x48 G.H5 K 345 G.H5.21
Hydrophobic C-term L 330 - G.H3 L 245 G.H3.08
Van-der-waals C-term L 330 - G.H3 L 245 G.H3.08
Hydrophobic ICL2 L 121 - G.H5 T 336 G.H5.12
Van-der-waals ICL2 L 121 - G.H5 T 336 G.H5.12
Hydrophobic TM6 P 243 6x37 G.H5 L 349 G.H5.25
Hydrophobic TM3 I 117 3x54 G.H5 L 344 G.H5.20
Hydrophobic C-term W 321 - G.H2 I 208 G.H2.08
Van-der-waals C-term W 321 - G.H2 I 208 G.H2.08
Ionic ICL2 R 122 - G.s2s3 D 189 G.s2s3.02
Hydrophobic TM3 I 117 3x54 G.H5 N 343 G.H5.19
Hydrophobic TM6 K 238 6x32 G.H5 F 350 G.H5.26
Van-der-waals TM6 K 238 6x32 G.H5 F 350 G.H5.26
Hydrophobic C-term L 327 - G.H2 R 204 G.H2.04
Hydrophobic ICL1 G 44 - G.HN A 23 G.HN.51
Polar C-term L 330 - G.H2 R 204 G.H2.04
Hydrophobic C-term L 330 - G.H2 R 204 G.H2.04
Van-der-waals C-term L 330 - G.H2 R 204 G.H2.04
Polar C-term A 320 - G.H3 R 253 G.H3.16
Van-der-waals C-term A 320 - G.H3 R 253 G.H3.16
Hydrophobic ICL3 L 215 - G.H4 Y 298 G.H4.10
Hydrophobic TM5 A 199 5x65 G.H5 L 344 G.H5.20
Ionic H8 R 295 8x48 G.H5 E 342 G.H5.18
Polar H8 R 295 8x48 G.H5 E 342 G.H5.18
Van-der-waals H8 R 295 8x48 G.H5 E 342 G.H5.18
Hydrophobic TM3 I 117 3x54 G.H5 C 347 G.H5.23
Hydrophobic ICL2 P 120 - G.H5 T 336 G.H5.12
Van-der-waals ICL2 P 120 - G.H5 T 336 G.H5.12
Hydrophobic H8 Q 294 8x47 G.H5 D 346 G.H5.22
Van-der-waals H8 Q 294 8x47 G.H5 D 346 G.H5.22
Hydrophobic TM6 A 242 6x36 G.H5 G 348 G.H5.24
Polar C-term H 322 - G.H3 Y 254 G.H3.17
Polar C-term W 321 - G.H3 Y 254 G.H3.17
Aromatic C-term W 321 - G.H3 Y 254 G.H3.17
Hydrophobic C-term W 321 - G.H3 Y 254 G.H3.17
Van-der-waals C-term W 321 - G.H3 Y 254 G.H3.17
Hydrophobic TM5 Y 192 5x58 G.H5 L 349 G.H5.25
Van-der-waals C-term H 322 - G.H3 R 253 G.H3.16
Hydrophobic TM3 I 117 3x54 G.H5 L 349 G.H5.25
Van-der-waals TM3 I 117 3x54 G.H5 L 349 G.H5.25
Hydrophobic ICL2 P 120 - G.H5 I 339 G.H5.15
Van-der-waals ICL2 P 120 - G.H5 I 339 G.H5.15
Hydrophobic TM5 I 195 5x61 G.H5 L 344 G.H5.20
Polar TM7 L 293 7x56 G.H5 G 348 G.H5.24
Hydrophobic TM7 L 293 7x56 G.H5 G 348 G.H5.24
Van-der-waals TM7 L 293 7x56 G.H5 G 348 G.H5.24
Polar C-term A 320 - G.H3 Y 254 G.H3.17
Hydrophobic C-term A 320 - G.H3 Y 254 G.H3.17
Van-der-waals C-term A 320 - G.H3 Y 254 G.H3.17
Polar TM5 A 202 5x68 G.H5 K 341 G.H5.17
Hydrophobic TM5 A 202 5x68 G.H5 K 341 G.H5.17
Van-der-waals TM5 A 202 5x68 G.H5 K 341 G.H5.17