Ggust - BB2 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 79.5

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.5
PAE mean: 16.2


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Ionic TM6 R 259 6x30 G.H5 D 341 G.H5.13
Hydrophobic TM3 I 142 3x54 G.H5 L 348 G.H5.20
Polar TM3 D 137 3x49 G.H5 C 351 G.H5.23
Hydrophobic TM3 D 137 3x49 G.H5 C 351 G.H5.23
Van-der-waals TM3 D 137 3x49 G.H5 C 351 G.H5.23
Ionic TM4 K 156 4x41 G.HN E 28 G.HN.52
Polar TM6 H 251 6x22 G.h4s6 K 317 G.h4s6.11
Hydrophobic TM6 H 251 6x22 G.h4s6 K 317 G.h4s6.11
Hydrophobic TM6 Q 255 6x26 G.H5 I 344 G.H5.16
Van-der-waals TM6 Q 255 6x26 G.H5 I 344 G.H5.16
Polar TM6 H 251 6x22 G.h4s6 K 314 G.h4s6.08
Van-der-waals TM6 H 251 6x22 G.h4s6 K 314 G.h4s6.08
Hydrophobic TM6 L 262 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 L 262 6x33 G.H5 L 353 G.H5.25
Polar TM2 N 73 2x37 G.H5 D 350 G.H5.22
Hydrophobic TM2 N 73 2x37 G.H5 D 350 G.H5.22
Van-der-waals TM2 N 73 2x37 G.H5 D 350 G.H5.22
Hydrophobic TM6 L 262 6x33 G.H5 C 351 G.H5.23
Van-der-waals TM6 L 262 6x33 G.H5 C 351 G.H5.23
Hydrophobic TM6 R 259 6x30 G.H5 I 344 G.H5.16
Van-der-waals TM6 R 259 6x30 G.H5 I 344 G.H5.16
Hydrophobic ICL2 S 151 34x56 G.HN A 27 G.HN.51
Van-der-waals ICL2 S 151 34x56 G.HN A 27 G.HN.51
Hydrophobic ICL2 A 150 34x55 G.hns1 A 31 G.hns1.02
Hydrophobic TM6 S 258 6x29 G.H5 F 354 G.H5.26
Van-der-waals TM6 S 258 6x29 G.H5 F 354 G.H5.26
Hydrophobic TM2 P 75 2x39 G.H5 D 350 G.H5.22
Hydrophobic ICL2 I 148 34x53 G.H5 N 347 G.H5.19
Van-der-waals ICL2 I 148 34x53 G.H5 N 347 G.H5.19
Polar TM3 R 138 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 138 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 138 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM6 T 265 6x36 G.H5 L 353 G.H5.25
Van-der-waals TM6 T 265 6x36 G.H5 L 353 G.H5.25
Hydrophobic TM2 N 73 2x37 G.H5 G 352 G.H5.24
Van-der-waals TM2 N 73 2x37 G.H5 G 352 G.H5.24
Hydrophobic ICL2 M 146 34x51 G.S3 L 194 G.S3.01
Van-der-waals ICL2 M 146 34x51 G.S3 L 194 G.S3.01
Polar ICL2 Q 149 34x54 G.HN E 28 G.HN.52
Hydrophobic ICL2 Q 149 34x54 G.HN E 28 G.HN.52
Van-der-waals ICL2 Q 149 34x54 G.HN E 28 G.HN.52
Ionic TM6 H 251 6x22 G.h4s6 E 318 G.h4s6.12
Polar TM6 H 251 6x22 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 H 251 6x22 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 H 251 6x22 G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL2 P 145 34x50 G.H5 I 344 G.H5.16
Van-der-waals ICL2 P 145 34x50 G.H5 I 344 G.H5.16
Hydrophobic TM2 P 75 2x39 G.H5 C 351 G.H5.23
Van-der-waals TM2 P 75 2x39 G.H5 C 351 G.H5.23
Hydrophobic TM3 A 141 3x53 G.H5 C 351 G.H5.23
Van-der-waals TM3 A 141 3x53 G.H5 C 351 G.H5.23
Hydrophobic C-term L 373 - G.H2 I 212 G.H2.08
Hydrophobic TM6 R 259 6x30 G.H5 L 348 G.H5.20
Van-der-waals TM6 R 259 6x30 G.H5 L 348 G.H5.20
Polar TM2 V 74 2x38 G.H5 D 350 G.H5.22
Polar ICL2 P 145 34x50 G.H5 N 347 G.H5.19
Van-der-waals ICL2 P 145 34x50 G.H5 N 347 G.H5.19
Hydrophobic ICL2 P 145 34x50 G.H5 I 343 G.H5.15
Hydrophobic TM6 Q 255 6x26 G.H5 L 348 G.H5.20
Ionic ICL3 E 247 - G.H4 K 304 G.H4.12
Hydrophobic ICL2 M 146 34x51 G.H5 T 340 G.H5.12
Ionic ICL2 D 147 34x52 G.hns1 R 32 G.hns1.03
Polar ICL2 D 147 34x52 G.hns1 R 32 G.hns1.03
Hydrophobic TM6 S 258 6x29 G.H5 L 348 G.H5.20
Hydrophobic ICL2 Q 149 34x54 G.hns1 A 31 G.hns1.02
Polar TM6 Q 255 6x26 G.H5 D 341 G.H5.13
Hydrophobic TM6 Q 255 6x26 G.H5 D 341 G.H5.13
Van-der-waals TM6 Q 255 6x26 G.H5 D 341 G.H5.13
Hydrophobic TM3 R 138 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 138 3x50 G.H5 L 353 G.H5.25
Hydrophobic ICL2 M 146 34x51 G.H5 I 343 G.H5.15
Van-der-waals ICL2 M 146 34x51 G.H5 I 343 G.H5.15
Hydrophobic TM6 L 262 6x33 G.H5 L 348 G.H5.20
Van-der-waals TM6 L 262 6x33 G.H5 L 348 G.H5.20