Ggust - Y1 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 82.7

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.8
PAE mean: 12.0


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM6 I 261 6x33 G.H5 L 348 G.H5.20
Polar C-term Y 347 - G.h4s6 K 313 G.h4s6.04
Hydrophobic C-term Y 347 - G.h4s6 K 313 G.h4s6.04
Van-der-waals C-term Y 347 - G.h4s6 K 313 G.h4s6.04
Polar TM2 N 73 2x37 G.H5 D 350 G.H5.22
Van-der-waals TM2 N 73 2x37 G.H5 D 350 G.H5.22
Hydrophobic TM6 R 254 6x26 G.H5 L 348 G.H5.20
Polar ICL2 R 146 - G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 R 146 - G.H5 F 336 G.H5.08
Van-der-waals ICL2 R 146 - G.H5 F 336 G.H5.08
Ionic ICL3 R 249 - G.H5 D 341 G.H5.13
Polar ICL3 R 249 - G.H5 D 341 G.H5.13
Van-der-waals ICL3 R 249 - G.H5 D 341 G.H5.13
Hydrophobic TM6 M 264 6x36 G.H5 L 353 G.H5.25
Van-der-waals TM6 M 264 6x36 G.H5 L 353 G.H5.25
Hydrophobic TM5 R 237 5x64 G.H5 I 344 G.H5.16
Hydrophobic TM6 R 254 6x26 G.H5 F 354 G.H5.26
Van-der-waals TM6 R 254 6x26 G.H5 F 354 G.H5.26
Polar H8 N 326 8x49 G.H5 K 349 G.H5.21
Van-der-waals H8 N 326 8x49 G.H5 K 349 G.H5.21
Polar ICL2 P 145 - G.H5 N 347 G.H5.19
Van-der-waals ICL2 P 145 - G.H5 N 347 G.H5.19
Polar C-term A 351 - G.H3 S 252 G.H3.11
Van-der-waals C-term A 351 - G.H3 S 252 G.H3.11
Hydrophobic C-term T 354 - G.H2 R 208 G.H2.04
Polar ICL3 M 248 - G.S6 S 321 G.S6.03
Van-der-waals ICL3 M 248 - G.S6 S 321 G.S6.03
Hydrophobic C-term M 352 - G.H2 W 211 G.H2.07
Van-der-waals C-term M 352 - G.H2 W 211 G.H2.07
Hydrophobic TM6 L 265 6x37 G.H5 L 353 G.H5.25
Hydrophobic C-term K 361 - G.s4h3 V 240 G.s4h3.14
Hydrophobic C-term I 350 - G.H3 N 255 G.H3.14
Van-der-waals C-term I 350 - G.H3 N 255 G.H3.14
Hydrophobic TM5 M 245 5x72 G.H5 D 337 G.H5.09
Hydrophobic TM3 I 142 3x54 G.H5 L 353 G.H5.25
Polar ICL2 R 149 - G.H5 N 347 G.H5.19
Van-der-waals ICL2 R 149 - G.H5 N 347 G.H5.19
Hydrophobic C-term T 354 - G.H2 K 209 G.H2.05
Polar TM6 Y 253 6x25 G.h4s6 E 315 G.h4s6.09
Hydrophobic TM6 Y 253 6x25 G.h4s6 E 315 G.h4s6.09
Van-der-waals TM6 Y 253 6x25 G.h4s6 E 315 G.h4s6.09
Ionic C-term K 361 - G.s4h3 D 237 G.s4h3.11
Hydrophobic C-term K 361 - G.s4h3 D 237 G.s4h3.11
Van-der-waals C-term K 361 - G.s4h3 D 237 G.s4h3.11
Polar TM3 L 141 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 L 141 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 L 141 3x53 G.H5 N 347 G.H5.19
Ionic ICL3 R 249 - G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL3 R 249 - G.h4s6 E 318 G.h4s6.12
Van-der-waals ICL3 R 249 - G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 I 261 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 I 261 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM6 R 254 6x26 G.H5 K 345 G.H5.17
Van-der-waals TM6 R 254 6x26 G.H5 K 345 G.H5.17
Ionic H8 R 329 8x52 G.h4s6 D 316 G.h4s6.10
Polar H8 R 329 8x52 G.h4s6 D 316 G.h4s6.10
Polar ICL2 R 146 - G.s2s3 K 192 G.s2s3.01
Van-der-waals ICL2 R 146 - G.s2s3 K 192 G.s2s3.01
Hydrophobic ICL3 M 248 - G.S6 Y 320 G.S6.02
Van-der-waals ICL3 M 248 - G.S6 Y 320 G.S6.02
Polar C-term S 363 - G.H3 H 244 G.H3.03
Hydrophobic C-term S 363 - G.H3 H 244 G.H3.03
Van-der-waals C-term S 363 - G.H3 H 244 G.H3.03
Hydrophobic C-term L 364 - G.s4h3 N 241 G.s4h3.15
Van-der-waals C-term L 364 - G.s4h3 N 241 G.s4h3.15
Polar C-term I 350 - G.H3 S 252 G.H3.11
Hydrophobic C-term I 350 - G.H3 S 252 G.H3.11
Hydrophobic ICL2 P 145 - G.H5 I 343 G.H5.15
Van-der-waals ICL2 P 145 - G.H5 I 343 G.H5.15
Ionic C-term H 356 - G.s4h3 D 237 G.s4h3.11
Polar C-term H 356 - G.s4h3 D 237 G.s4h3.11
Hydrophobic C-term H 356 - G.s4h3 D 237 G.s4h3.11
Van-der-waals C-term H 356 - G.s4h3 D 237 G.s4h3.11
Hydrophobic TM5 R 241 5x68 G.H5 T 340 G.H5.12
Van-der-waals TM5 R 241 5x68 G.H5 T 340 G.H5.12
Polar ICL2 G 147 - G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 G 147 - G.hns1 R 32 G.hns1.03
Aromatic H8 K 325 8x48 G.H5 F 354 G.H5.26
Hydrophobic H8 K 325 8x48 G.H5 F 354 G.H5.26
Van-der-waals H8 K 325 8x48 G.H5 F 354 G.H5.26
Hydrophobic C-term M 352 - G.H3 H 256 G.H3.15
Hydrophobic TM5 M 244 5x71 G.H5 D 337 G.H5.09
Hydrophobic ICL2 R 149 - G.hns1 A 31 G.hns1.02
Polar C-term Y 347 - G.h3s5 S 260 G.h3s5.01
Hydrophobic C-term Y 347 - G.h3s5 S 260 G.h3s5.01
Van-der-waals C-term Y 347 - G.h3s5 S 260 G.h3s5.01
Hydrophobic TM3 R 138 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 138 3x50 G.H5 L 353 G.H5.25
Ionic TM4 R 153 4x40 G.HN E 20 G.HN.44
Polar TM4 R 153 4x40 G.HN E 20 G.HN.44
Hydrophobic TM4 R 153 4x40 G.HN E 20 G.HN.44
Van-der-waals TM4 R 153 4x40 G.HN E 20 G.HN.44
Polar C-term H 356 - G.H2 R 205 G.H2.01
Aromatic C-term H 356 - G.H2 R 205 G.H2.01
Hydrophobic C-term H 356 - G.H2 R 205 G.H2.01
Van-der-waals C-term H 356 - G.H2 R 205 G.H2.01
Hydrophobic TM3 I 142 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 142 3x54 G.H5 L 348 G.H5.20
Polar TM6 N 251 6x23 G.h4s6 K 314 G.h4s6.08
Hydrophobic TM6 N 251 6x23 G.h4s6 K 314 G.h4s6.08
Van-der-waals TM6 N 251 6x23 G.h4s6 K 314 G.h4s6.08
Hydrophobic H8 N 324 8x47 G.H5 G 352 G.H5.24
Van-der-waals H8 N 324 8x47 G.H5 G 352 G.H5.24
Polar C-term S 353 - G.H2 R 208 G.H2.04
Hydrophobic C-term S 353 - G.H2 R 208 G.H2.04
Van-der-waals C-term S 353 - G.H2 R 208 G.H2.04
Hydrophobic TM5 R 241 5x68 G.H5 I 344 G.H5.16
Hydrophobic C-term S 360 - G.s4h3 V 240 G.s4h3.14
Van-der-waals C-term S 360 - G.s4h3 V 240 G.s4h3.14
Hydrophobic TM5 L 238 5x65 G.H5 L 348 G.H5.20
Polar TM2 T 75 2x39 G.H5 D 350 G.H5.22
Hydrophobic ICL2 R 146 - G.S3 L 194 G.S3.01
Van-der-waals ICL2 R 146 - G.S3 L 194 G.S3.01
Polar C-term I 350 - G.H3 H 256 G.H3.15
Van-der-waals C-term I 350 - G.H3 H 256 G.H3.15
Polar TM4 R 153 4x40 G.HN Q 24 G.HN.48
Hydrophobic TM4 R 153 4x40 G.HN Q 24 G.HN.48
Van-der-waals TM4 R 153 4x40 G.HN Q 24 G.HN.48
Ionic TM6 R 254 6x26 G.h4s6 E 318 G.h4s6.12
Polar TM6 R 254 6x26 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 R 254 6x26 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 R 254 6x26 G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL3 M 248 - G.H5 F 334 G.H5.06
Van-der-waals ICL3 M 248 - G.H5 F 334 G.H5.06
Polar C-term M 352 - G.H3 S 252 G.H3.11
Van-der-waals C-term M 352 - G.H3 S 252 G.H3.11
Hydrophobic C-term M 352 - G.H3 I 253 G.H3.12
Ionic TM6 R 254 6x26 G.H5 D 341 G.H5.13
Polar TM6 R 254 6x26 G.H5 D 341 G.H5.13
Hydrophobic C-term L 364 - G.s4h3 V 240 G.s4h3.14
Hydrophobic TM5 M 245 5x72 G.S6 Y 320 G.S6.02
Hydrophobic C-term V 359 - G.H3 H 248 G.H3.07
Van-der-waals C-term V 359 - G.H3 H 248 G.H3.07
Hydrophobic C-term L 364 - G.s4h3 V 233 G.s4h3.07
Ionic ICL2 R 146 - G.s2s3 D 193 G.s2s3.02
Polar ICL2 R 146 - G.s2s3 D 193 G.s2s3.02
Polar TM6 N 251 6x23 G.h4s6 E 315 G.h4s6.09
Hydrophobic C-term M 352 - G.h2s4 F 215 G.h2s4.01
Van-der-waals C-term M 352 - G.h2s4 F 215 G.h2s4.01
Hydrophobic TM6 N 251 6x23 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 N 251 6x23 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM4 N 151 4x38 G.HN Q 24 G.HN.48
Polar TM6 D 250 6x22 G.S6 I 319 G.S6.01
Hydrophobic ICL2 P 145 - G.H5 T 340 G.H5.12
Polar C-term S 363 - G.hgh4 C 286 G.hgh4.01
Polar C-term S 353 - G.H3 S 252 G.H3.11
Hydrophobic TM5 L 238 5x65 G.H5 I 344 G.H5.16
Hydrophobic TM6 I 261 6x33 G.H5 F 354 G.H5.26
Ionic TM5 R 241 5x68 G.H5 D 337 G.H5.09
Polar TM5 R 241 5x68 G.H5 D 337 G.H5.09
Van-der-waals TM5 R 241 5x68 G.H5 D 337 G.H5.09
Polar C-term S 360 - G.H3 H 248 G.H3.07
Hydrophobic C-term S 360 - G.H3 H 248 G.H3.07
Polar TM3 R 138 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 138 3x50 G.H5 C 351 G.H5.23
Hydrophobic C-term M 352 - G.H2 R 208 G.H2.04
Van-der-waals C-term M 352 - G.H2 R 208 G.H2.04
Hydrophobic ICL2 P 145 - G.H5 I 344 G.H5.16
Hydrophobic ICL3 R 249 - G.S6 Y 320 G.S6.02
Hydrophobic TM2 T 75 2x39 G.H5 C 351 G.H5.23
Hydrophobic TM3 L 141 3x53 G.H5 C 351 G.H5.23
Van-der-waals TM3 L 141 3x53 G.H5 C 351 G.H5.23
Hydrophobic TM5 M 245 5x72 G.H5 D 341 G.H5.13
Hydrophobic C-term T 349 - G.H3 K 257 G.H3.16
Hydrophobic TM6 E 257 6x29 G.H5 F 354 G.H5.26
Van-der-waals TM6 E 257 6x29 G.H5 F 354 G.H5.26
Hydrophobic TM6 D 250 6x22 G.H4 L 308 G.H4.16
Van-der-waals TM6 D 250 6x22 G.H4 L 308 G.H4.16
Ionic C-term K 361 - G.s4h3 E 239 G.s4h3.13
Polar C-term K 361 - G.s4h3 E 239 G.s4h3.13
Van-der-waals C-term K 361 - G.s4h3 E 239 G.s4h3.13
Hydrophobic C-term L 364 - G.s4h3 E 239 G.s4h3.13
Van-der-waals C-term L 364 - G.s4h3 E 239 G.s4h3.13
Hydrophobic C-term Y 347 - G.H3 K 257 G.H3.16