Gi2 - OR51M1 complex model

GPCR CLASS (FAMILY)

O1 (fish-like odorant)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

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Tertiary structure confidence

(pLDDT score) avg.: 81.3

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.5
iPTM Score: 0.2
PAE mean: 24.9


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic H8 E 310 8x49 G.H5 G 353 G.H5.24
Hydrophobic ICL2 L 142 34x51 G.H5 N 348 G.H5.19
Van-der-waals ICL2 L 142 34x51 G.H5 N 348 G.H5.19
Hydrophobic ICL2 L 142 34x51 G.S3 F 197 G.S3.03
Hydrophobic TM3 R 134 3x50 G.H5 L 354 G.H5.25
Van-der-waals TM3 R 134 3x50 G.H5 L 354 G.H5.25
Ionic TM6 E 245 6x29 G.H5 K 346 G.H5.17
Polar TM6 E 245 6x29 G.H5 K 346 G.H5.17
Hydrophobic TM6 E 245 6x29 G.H5 K 346 G.H5.17
Van-der-waals TM6 E 245 6x29 G.H5 K 346 G.H5.17
Hydrophobic TM3 A 137 3x53 G.H5 L 349 G.H5.20
Van-der-waals TM3 A 137 3x53 G.H5 L 349 G.H5.20
Polar TM3 R 134 3x50 G.H5 G 353 G.H5.24
Hydrophobic TM3 R 134 3x50 G.H5 G 353 G.H5.24
Van-der-waals TM3 R 134 3x50 G.H5 G 353 G.H5.24
Ionic ICL1 R 66 12x49 G.h3s5 D 262 G.h3s5.02
Hydrophobic TM3 A 137 3x53 G.H5 L 354 G.H5.25
Van-der-waals TM3 A 137 3x53 G.H5 L 354 G.H5.25
Hydrophobic TM6 E 245 6x29 G.H5 F 355 G.H5.26
Hydrophobic TM6 T 252 6x36 G.H5 G 353 G.H5.24
Polar TM6 T 252 6x36 G.H5 F 355 G.H5.26
Hydrophobic TM6 T 252 6x36 G.H5 F 355 G.H5.26
Van-der-waals TM6 T 252 6x36 G.H5 F 355 G.H5.26
Hydrophobic ICL2 R 143 34x52 G.S3 L 195 G.S3.01
Van-der-waals ICL2 R 143 34x52 G.S3 L 195 G.S3.01
Hydrophobic ICL2 V 146 34x55 G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 V 146 34x55 G.hns1 R 32 G.hns1.03
Polar ICL2 L 142 34x51 G.H5 I 345 G.H5.16
Hydrophobic ICL2 L 142 34x51 G.H5 I 345 G.H5.16
Van-der-waals ICL2 L 142 34x51 G.H5 I 345 G.H5.16
Ionic TM6 R 248 6x32 G.h4s6 E 319 G.h4s6.12
Hydrophobic TM4 T 149 4x38 G.HN E 28 G.HN.52
Hydrophobic TM3 I 138 3x54 G.H5 L 349 G.H5.20
Hydrophobic ICL2 Y 144 34x53 G.H5 L 354 G.H5.25
Van-der-waals ICL2 Y 144 34x53 G.H5 L 354 G.H5.25
Ionic ICL2 R 143 34x52 G.s2s3 D 194 G.s2s3.02
Polar ICL2 R 143 34x52 G.s2s3 D 194 G.s2s3.02
Hydrophobic ICL2 R 143 34x52 G.s2s3 D 194 G.s2s3.02
Van-der-waals ICL2 R 143 34x52 G.s2s3 D 194 G.s2s3.02
Polar TM3 R 134 3x50 G.H5 C 352 G.H5.23
Van-der-waals TM3 R 134 3x50 G.H5 C 352 G.H5.23
Hydrophobic ICL2 L 142 34x51 G.H5 I 344 G.H5.15
Van-der-waals ICL2 L 142 34x51 G.H5 I 344 G.H5.15
Hydrophobic ICL2 L 142 34x51 G.S1 V 34 G.S1.02
Van-der-waals ICL2 L 142 34x51 G.S1 V 34 G.S1.02
Hydrophobic ICL2 P 141 34x50 G.H5 K 346 G.H5.17
Hydrophobic TM6 R 248 6x32 G.H5 F 355 G.H5.26
Van-der-waals TM6 R 248 6x32 G.H5 F 355 G.H5.26
Hydrophobic ICL2 P 141 34x50 G.H5 L 349 G.H5.20
Van-der-waals ICL2 P 141 34x50 G.H5 L 349 G.H5.20
Polar ICL2 S 145 34x54 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 S 145 34x54 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 S 145 34x54 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 Y 144 34x53 G.H5 L 349 G.H5.20
Hydrophobic ICL2 L 142 34x51 G.H5 T 341 G.H5.12
Van-der-waals ICL2 L 142 34x51 G.H5 T 341 G.H5.12
Hydrophobic ICL2 V 146 34x55 G.HN E 28 G.HN.52
Van-der-waals ICL2 V 146 34x55 G.HN E 28 G.HN.52
Hydrophobic ICL2 L 142 34x51 G.S3 L 195 G.S3.01
Van-der-waals ICL2 L 142 34x51 G.S3 L 195 G.S3.01
Hydrophobic TM6 A 249 6x33 G.H5 F 355 G.H5.26
Hydrophobic ICL2 P 141 34x50 G.H5 I 345 G.H5.16
Van-der-waals ICL2 P 141 34x50 G.H5 I 345 G.H5.16
Hydrophobic TM4 G 150 4x39 G.HN E 28 G.HN.52
Van-der-waals TM4 G 150 4x39 G.HN E 28 G.HN.52
Hydrophobic TM4 T 149 4x38 G.hns1 A 31 G.hns1.02
Van-der-waals TM4 T 149 4x38 G.hns1 A 31 G.hns1.02
Polar ICL2 V 146 34x55 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 V 146 34x55 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 V 146 34x55 G.hns1 A 31 G.hns1.02
Polar TM4 Q 151 4x40 G.HN E 28 G.HN.52
Hydrophobic TM4 Q 151 4x40 G.HN E 28 G.HN.52
Van-der-waals TM4 Q 151 4x40 G.HN E 28 G.HN.52
Hydrophobic ICL2 Y 144 34x53 G.H5 C 352 G.H5.23
Van-der-waals ICL2 Y 144 34x53 G.H5 C 352 G.H5.23
Hydrophobic TM4 Q 151 4x40 G.HN R 24 G.HN.48
Van-der-waals TM4 Q 151 4x40 G.HN R 24 G.HN.48
Polar TM6 T 252 6x36 G.H5 L 354 G.H5.25
Hydrophobic TM6 T 252 6x36 G.H5 L 354 G.H5.25
Van-der-waals TM6 T 252 6x36 G.H5 L 354 G.H5.25
Hydrophobic TM3 H 140 3x56 G.H5 I 345 G.H5.16