Gi2 - OR51V1 complex model

GPCR CLASS (FAMILY)

O1 (fish-like odorant)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 84.8

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.3
PAE mean: 21.8


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar TM2 Q 66 2x37 G.H5 G 353 G.H5.24
Van-der-waals TM2 Q 66 2x37 G.H5 G 353 G.H5.24
Hydrophobic TM3 I 135 3x54 G.H5 L 349 G.H5.20
Hydrophobic TM3 A 134 3x53 G.H5 L 354 G.H5.25
Van-der-waals TM3 A 134 3x53 G.H5 L 354 G.H5.25
Polar ICL2 S 143 34x55 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 S 143 34x55 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 S 143 34x55 G.hns1 A 31 G.hns1.02
Hydrophobic TM2 M 68 2x39 G.H5 C 352 G.H5.23
Van-der-waals TM2 M 68 2x39 G.H5 C 352 G.H5.23
Hydrophobic TM6 K 245 6x32 G.H5 F 355 G.H5.26
Van-der-waals TM6 K 245 6x32 G.H5 F 355 G.H5.26
Hydrophobic TM3 A 134 3x53 G.H5 L 349 G.H5.20
Van-der-waals TM3 A 134 3x53 G.H5 L 349 G.H5.20
Polar TM6 T 249 6x36 G.H5 L 354 G.H5.25
Hydrophobic TM6 T 249 6x36 G.H5 L 354 G.H5.25
Van-der-waals TM6 T 249 6x36 G.H5 L 354 G.H5.25
Polar TM2 Q 66 2x37 G.H5 D 351 G.H5.22
Hydrophobic TM2 Q 66 2x37 G.H5 D 351 G.H5.22
Van-der-waals TM2 Q 66 2x37 G.H5 D 351 G.H5.22
Polar ICL2 Y 141 34x53 G.H5 C 352 G.H5.23
Hydrophobic ICL2 Y 141 34x53 G.H5 C 352 G.H5.23
Van-der-waals ICL2 Y 141 34x53 G.H5 C 352 G.H5.23
Polar TM4 S 148 4x40 G.HN R 24 G.HN.48
Hydrophobic TM2 M 68 2x39 G.H5 G 353 G.H5.24
Van-der-waals TM2 M 68 2x39 G.H5 G 353 G.H5.24
Ionic TM4 R 149 4x41 G.HN E 28 G.HN.52
Polar TM4 R 149 4x41 G.HN E 28 G.HN.52
Hydrophobic TM4 R 149 4x41 G.HN E 28 G.HN.52
Van-der-waals TM4 R 149 4x41 G.HN E 28 G.HN.52
Hydrophobic ICL2 P 138 34x50 G.H5 K 346 G.H5.17
Hydrophobic TM2 M 68 2x39 G.H5 L 354 G.H5.25
Van-der-waals TM2 M 68 2x39 G.H5 L 354 G.H5.25
Hydrophobic ICL2 P 138 34x50 G.H5 L 349 G.H5.20
Van-der-waals ICL2 P 138 34x50 G.H5 L 349 G.H5.20
Hydrophobic ICL2 L 139 34x51 G.H5 T 341 G.H5.12
Van-der-waals ICL2 L 139 34x51 G.H5 T 341 G.H5.12
Hydrophobic TM4 K 152 4x44 G.HN R 24 G.HN.48
Van-der-waals TM4 K 152 4x44 G.HN R 24 G.HN.48
Hydrophobic TM6 L 246 6x33 G.H5 F 355 G.H5.26
Van-der-waals TM6 L 246 6x33 G.H5 F 355 G.H5.26
Ionic ICL2 R 140 34x52 G.s2s3 D 194 G.s2s3.02
Polar ICL2 R 140 34x52 G.s2s3 D 194 G.s2s3.02
Hydrophobic ICL2 R 140 34x52 G.s2s3 D 194 G.s2s3.02
Van-der-waals ICL2 R 140 34x52 G.s2s3 D 194 G.s2s3.02
Hydrophobic ICL2 L 139 34x51 G.S1 V 34 G.S1.02
Hydrophobic ICL2 R 140 34x52 G.S3 L 195 G.S3.01
Polar TM2 Q 66 2x37 G.H5 C 352 G.H5.23
Hydrophobic TM2 Q 66 2x37 G.H5 C 352 G.H5.23
Van-der-waals TM2 Q 66 2x37 G.H5 C 352 G.H5.23
Hydrophobic ICL2 P 138 34x50 G.H5 I 345 G.H5.16
Van-der-waals ICL2 P 138 34x50 G.H5 I 345 G.H5.16
Hydrophobic ICL2 Y 141 34x53 G.H5 L 349 G.H5.20
Hydrophobic TM3 R 131 3x50 G.H5 L 354 G.H5.25
Van-der-waals TM3 R 131 3x50 G.H5 L 354 G.H5.25
Hydrophobic ICL2 L 139 34x51 G.H5 I 344 G.H5.15
Van-der-waals ICL2 L 139 34x51 G.H5 I 344 G.H5.15
Ionic TM6 E 242 6x29 G.H5 K 346 G.H5.17
Polar TM6 E 242 6x29 G.H5 K 346 G.H5.17
Hydrophobic TM6 E 242 6x29 G.H5 K 346 G.H5.17
Van-der-waals TM6 E 242 6x29 G.H5 K 346 G.H5.17
Polar ICL2 S 142 34x54 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 S 142 34x54 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 S 142 34x54 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 L 139 34x51 G.s2s3 K 193 G.s2s3.01
Polar ICL2 S 143 34x55 G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 S 143 34x55 G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 S 143 34x55 G.hns1 R 32 G.hns1.03
Hydrophobic TM2 F 69 2x40 G.H5 G 353 G.H5.24
Van-der-waals TM2 F 69 2x40 G.H5 G 353 G.H5.24
Hydrophobic ICL2 L 139 34x51 G.S3 L 195 G.S3.01
Van-der-waals ICL2 L 139 34x51 G.S3 L 195 G.S3.01
Hydrophobic TM4 T 146 4x38 G.hns1 A 31 G.hns1.02
Hydrophobic TM3 N 137 3x56 G.H5 I 345 G.H5.16
Hydrophobic ICL2 L 139 34x51 G.H5 I 345 G.H5.16
Van-der-waals ICL2 L 139 34x51 G.H5 I 345 G.H5.16