Gs - OPN5 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gs

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 77.2

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.5
PAE mean: 18.5


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar TM6 R 239 6x22 G.S6 P 361 G.S6.03
Van-der-waals TM6 R 239 6x22 G.S6 P 361 G.S6.03
Hydrophobic ICL3 D 237 - G.H5 D 378 G.H5.10
Ionic ICL1 R 66 12x51 G.H5 E 392 G.H5.24
Hydrophobic ICL1 R 66 12x51 G.H5 E 392 G.H5.24
Van-der-waals ICL1 R 66 12x51 G.H5 E 392 G.H5.24
Polar TM3 K 134 3x53 G.H5 Y 391 G.H5.23
Hydrophobic TM3 K 134 3x53 G.H5 Y 391 G.H5.23
Van-der-waals TM3 K 134 3x53 G.H5 Y 391 G.H5.23
Hydrophobic TM3 K 134 3x53 G.H5 L 393 G.H5.25
Van-der-waals TM3 K 134 3x53 G.H5 L 393 G.H5.25
Polar ICL2 S 139 34x51 G.H5 Y 391 G.H5.23
Hydrophobic ICL2 S 139 34x51 G.H5 Y 391 G.H5.23
Van-der-waals ICL2 S 139 34x51 G.H5 Y 391 G.H5.23
Ionic TM6 R 239 6x22 G.H5 D 378 G.H5.10
Polar TM6 R 239 6x22 G.H5 D 378 G.H5.10
Hydrophobic TM6 R 239 6x22 G.H5 D 378 G.H5.10
Van-der-waals TM6 R 239 6x22 G.H5 D 378 G.H5.10
Hydrophobic TM5 V 233 5x72 G.H5 D 381 G.H5.13
Van-der-waals TM5 V 233 5x72 G.H5 D 381 G.H5.13
Polar TM3 Y 137 3x56 G.H5 Y 391 G.H5.23
Hydrophobic TM3 Y 137 3x56 G.H5 Y 391 G.H5.23
Van-der-waals TM3 Y 137 3x56 G.H5 Y 391 G.H5.23
Polar TM6 I 240 6x23 G.H5 D 381 G.H5.13
Hydrophobic TM6 I 240 6x23 G.H5 D 381 G.H5.13
Van-der-waals TM6 I 240 6x23 G.H5 D 381 G.H5.13
Aromatic ICL3 H 235 - G.H5 R 380 G.H5.12
Hydrophobic ICL3 H 235 - G.H5 R 380 G.H5.12
Hydrophobic ICL2 L 138 34x50 G.H5 L 388 G.H5.20
Van-der-waals ICL2 L 138 34x50 G.H5 L 388 G.H5.20
Hydrophobic ICL3 F 236 - G.S3 V 217 G.S3.01
Polar TM6 R 239 6x22 G.S6 H 362 G.S6.04
Hydrophobic TM6 R 239 6x22 G.S6 H 362 G.S6.04
Van-der-waals TM6 R 239 6x22 G.S6 H 362 G.S6.04
Hydrophobic ICL3 F 236 - G.H5 R 380 G.H5.12
Van-der-waals ICL3 F 236 - G.H5 R 380 G.H5.12
Hydrophobic ICL3 D 237 - G.S6 Y 360 G.S6.02
Van-der-waals ICL3 D 237 - G.S6 Y 360 G.S6.02
Polar ICL2 Y 140 34x52 G.H5 Y 391 G.H5.23
Hydrophobic ICL2 Y 140 34x52 G.H5 Y 391 G.H5.23
Van-der-waals ICL2 Y 140 34x52 G.H5 Y 391 G.H5.23
Polar ICL2 S 139 34x51 G.H5 H 387 G.H5.19
Hydrophobic ICL2 S 139 34x51 G.H5 H 387 G.H5.19
Van-der-waals ICL2 S 139 34x51 G.H5 H 387 G.H5.19
Hydrophobic TM6 R 239 6x22 G.S6 Y 360 G.S6.02
Hydrophobic ICL2 L 138 34x50 G.H5 Q 384 G.H5.16
Polar ICL3 F 236 - G.H5 N 377 G.H5.09
Hydrophobic ICL3 F 236 - G.H5 N 377 G.H5.09
Van-der-waals ICL3 F 236 - G.H5 N 377 G.H5.09
Polar ICL2 G 141 34x53 G.H5 Y 391 G.H5.23
Hydrophobic ICL2 G 141 34x53 G.H5 Y 391 G.H5.23
Van-der-waals ICL2 G 141 34x53 G.H5 Y 391 G.H5.23
Hydrophobic ICL2 V 142 34x54 G.H5 Y 391 G.H5.23
Van-der-waals ICL2 V 142 34x54 G.H5 Y 391 G.H5.23
Polar TM5 E 232 5x71 G.H5 R 380 G.H5.12
Hydrophobic TM5 E 232 5x71 G.H5 R 380 G.H5.12
Van-der-waals TM5 E 232 5x71 G.H5 R 380 G.H5.12
Hydrophobic ICL3 D 237 - G.H5 D 381 G.H5.13
Van-der-waals ICL3 D 237 - G.H5 D 381 G.H5.13
Polar ICL2 L 138 34x50 G.H5 H 387 G.H5.19
Hydrophobic ICL2 L 138 34x50 G.H5 H 387 G.H5.19
Van-der-waals ICL2 L 138 34x50 G.H5 H 387 G.H5.19
Aromatic ICL3 F 236 - G.H5 F 376 G.H5.08
Hydrophobic ICL3 F 236 - G.H5 F 376 G.H5.08
Van-der-waals ICL3 F 236 - G.H5 F 376 G.H5.08
Polar ICL2 L 138 34x50 G.H5 Y 391 G.H5.23
Hydrophobic ICL2 L 138 34x50 G.H5 Y 391 G.H5.23
Van-der-waals ICL2 L 138 34x50 G.H5 Y 391 G.H5.23
Hydrophobic C-term F 332 - G.H3 R 280 G.H3.16
Van-der-waals C-term F 332 - G.H3 R 280 G.H3.16
Polar TM6 R 239 6x22 G.H5 R 385 G.H5.17
Hydrophobic TM6 R 239 6x22 G.H5 R 385 G.H5.17
Van-der-waals TM6 R 239 6x22 G.H5 R 385 G.H5.17
Hydrophobic TM6 I 240 6x23 G.H5 R 385 G.H5.17
Van-der-waals TM6 I 240 6x23 G.H5 R 385 G.H5.17
Polar ICL3 D 237 - G.H5 N 377 G.H5.09
Hydrophobic ICL3 D 237 - G.H5 N 377 G.H5.09
Van-der-waals ICL3 D 237 - G.H5 N 377 G.H5.09
Hydrophobic TM6 I 240 6x23 G.H5 L 388 G.H5.20
Hydrophobic TM2 P 67 2x38 G.H5 E 392 G.H5.24
Van-der-waals TM2 P 67 2x38 G.H5 E 392 G.H5.24
Polar TM5 V 233 5x72 G.H5 Q 384 G.H5.16
Hydrophobic TM5 V 233 5x72 G.H5 Q 384 G.H5.16
Van-der-waals TM5 V 233 5x72 G.H5 Q 384 G.H5.16
Polar ICL2 V 142 34x54 G.H5 Q 390 G.H5.22
Hydrophobic ICL2 V 142 34x54 G.H5 Q 390 G.H5.22
Van-der-waals ICL2 V 142 34x54 G.H5 Q 390 G.H5.22
Ionic TM3 K 134 3x53 G.H5 E 392 G.H5.24
Polar TM3 K 134 3x53 G.H5 E 392 G.H5.24
Van-der-waals TM3 K 134 3x53 G.H5 E 392 G.H5.24
Polar TM5 E 232 5x71 G.H5 Q 384 G.H5.16
Hydrophobic TM3 I 135 3x54 G.H5 L 393 G.H5.25
Van-der-waals TM3 I 135 3x54 G.H5 L 393 G.H5.25