Gt2 - OR1A1 complex model

GPCR CLASS (FAMILY)

O2 (tetrapod specific odorant)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 84.7

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.4
PAE mean: 20.3


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar ICL2 L 130 34x51 G.S1 T 33 G.S1.01
Van-der-waals ICL2 L 130 34x51 G.S1 T 33 G.S1.01
Hydrophobic ICL2 L 130 34x51 G.S3 L 194 G.S3.01
Van-der-waals ICL2 L 130 34x51 G.S3 L 194 G.S3.01
Polar TM2 N 57 2x37 G.H5 D 350 G.H5.22
Hydrophobic TM2 N 57 2x37 G.H5 D 350 G.H5.22
Van-der-waals TM2 N 57 2x37 G.H5 D 350 G.H5.22
Polar ICL2 H 131 34x52 G.S1 T 33 G.S1.01
Hydrophobic ICL2 H 131 34x52 G.S1 T 33 G.S1.01
Van-der-waals ICL2 H 131 34x52 G.S1 T 33 G.S1.01
Hydrophobic TM3 I 126 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 126 3x54 G.H5 L 348 G.H5.20
Polar ICL2 Y 132 34x53 G.H5 D 350 G.H5.22
Hydrophobic ICL2 Y 132 34x53 G.H5 D 350 G.H5.22
Van-der-waals ICL2 Y 132 34x53 G.H5 D 350 G.H5.22
Polar TM6 T 239 6x36 G.H5 L 353 G.H5.25
Hydrophobic TM6 T 239 6x36 G.H5 L 353 G.H5.25
Van-der-waals TM6 T 239 6x36 G.H5 L 353 G.H5.25
Polar TM3 R 122 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 122 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 122 3x50 G.H5 C 351 G.H5.23
Hydrophobic ICL2 L 130 34x51 G.S3 F 196 G.S3.03
Van-der-waals ICL2 L 130 34x51 G.S3 F 196 G.S3.03
Hydrophobic TM3 R 122 3x50 G.H5 L 353 G.H5.25
Hydrophobic ICL2 L 130 34x51 G.H5 I 343 G.H5.15
Van-der-waals ICL2 L 130 34x51 G.H5 I 343 G.H5.15
Hydrophobic ICL2 P 129 34x50 G.H5 I 344 G.H5.16
Van-der-waals ICL2 P 129 34x50 G.H5 I 344 G.H5.16
Polar H8 N 292 8x47 G.H5 G 352 G.H5.24
Polar ICL2 Y 132 34x53 G.H5 C 351 G.H5.23
Hydrophobic ICL2 Y 132 34x53 G.H5 C 351 G.H5.23
Van-der-waals ICL2 Y 132 34x53 G.H5 C 351 G.H5.23
Hydrophobic TM3 A 125 3x53 G.H5 C 351 G.H5.23
Van-der-waals TM3 A 125 3x53 G.H5 C 351 G.H5.23
Polar TM6 T 239 6x36 G.H5 F 354 G.H5.26
Ionic TM3 R 128 3x56 G.HN D 28 G.HN.52
Polar TM3 R 128 3x56 G.HN D 28 G.HN.52
Van-der-waals TM3 R 128 3x56 G.HN D 28 G.HN.52
Ionic ICL1 R 54 12x49 G.h4s6 D 315 G.h4s6.09
Polar ICL1 R 54 12x49 G.h4s6 D 315 G.h4s6.09
Van-der-waals ICL1 R 54 12x49 G.h4s6 D 315 G.h4s6.09
Polar TM6 T 239 6x36 G.H5 G 352 G.H5.24
Hydrophobic TM6 T 239 6x36 G.H5 G 352 G.H5.24
Van-der-waals TM6 T 239 6x36 G.H5 G 352 G.H5.24
Hydrophobic ICL2 I 135 34x56 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 I 135 34x56 G.hns1 A 31 G.hns1.02
Polar TM3 R 128 3x56 G.hns1 A 31 G.hns1.02
Van-der-waals TM3 R 128 3x56 G.hns1 A 31 G.hns1.02
Hydrophobic TM6 C 240 6x37 G.H5 L 353 G.H5.25
Hydrophobic TM2 M 59 2x39 G.H5 G 352 G.H5.24
Hydrophobic ICL2 L 130 34x51 G.hns1 K 32 G.hns1.03
Van-der-waals ICL2 L 130 34x51 G.hns1 K 32 G.hns1.03
Polar ICL2 T 134 34x55 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 T 134 34x55 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 T 134 34x55 G.hns1 A 31 G.hns1.02
Polar ICL2 H 131 34x52 G.hns1 K 32 G.hns1.03
Hydrophobic ICL2 H 131 34x52 G.hns1 K 32 G.hns1.03
Van-der-waals ICL2 H 131 34x52 G.hns1 K 32 G.hns1.03
Hydrophobic ICL2 L 130 34x51 G.H5 I 344 G.H5.16
Hydrophobic TM3 A 125 3x53 G.H5 L 348 G.H5.20
Polar ICL2 L 130 34x51 G.S1 V 34 G.S1.02
Hydrophobic ICL2 L 130 34x51 G.S1 V 34 G.S1.02
Van-der-waals ICL2 L 130 34x51 G.S1 V 34 G.S1.02
Hydrophobic TM6 K 235 6x32 G.H5 L 353 G.H5.25
Hydrophobic TM3 R 128 3x56 G.hns1 K 32 G.hns1.03
Van-der-waals TM3 R 128 3x56 G.hns1 K 32 G.hns1.03
Polar ICL2 P 129 34x50 G.H5 N 347 G.H5.19
Hydrophobic ICL2 P 129 34x50 G.H5 N 347 G.H5.19
Van-der-waals ICL2 P 129 34x50 G.H5 N 347 G.H5.19
Hydrophobic ICL2 Y 132 34x53 G.H5 N 347 G.H5.19
Aromatic TM6 K 235 6x32 G.H5 F 354 G.H5.26
Hydrophobic TM6 K 235 6x32 G.H5 F 354 G.H5.26
Van-der-waals TM6 K 235 6x32 G.H5 F 354 G.H5.26
Hydrophobic ICL1 R 54 12x49 G.h4s6 V 316 G.h4s6.10
Van-der-waals ICL1 R 54 12x49 G.h4s6 V 316 G.h4s6.10
Polar ICL2 H 131 34x52 G.hns1 E 30 G.hns1.01
Hydrophobic ICL2 H 131 34x52 G.hns1 E 30 G.hns1.01
Van-der-waals ICL2 H 131 34x52 G.hns1 E 30 G.hns1.01
Polar ICL2 T 134 34x55 G.hns1 E 30 G.hns1.01
Hydrophobic ICL2 T 134 34x55 G.hns1 E 30 G.hns1.01
Van-der-waals ICL2 T 134 34x55 G.hns1 E 30 G.hns1.01
Polar ICL2 H 131 34x52 G.S3 N 195 G.S3.02
Hydrophobic ICL2 H 131 34x52 G.S3 N 195 G.S3.02
Van-der-waals ICL2 H 131 34x52 G.S3 N 195 G.S3.02
Hydrophobic ICL2 H 131 34x52 G.S3 L 194 G.S3.01
Hydrophobic TM3 A 125 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 125 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM2 M 59 2x39 G.H5 C 351 G.H5.23
Van-der-waals TM2 M 59 2x39 G.H5 C 351 G.H5.23
Polar ICL2 H 131 34x52 G.HN K 29 G.HN.53
Hydrophobic ICL2 H 131 34x52 G.HN K 29 G.HN.53
Van-der-waals ICL2 H 131 34x52 G.HN K 29 G.HN.53
Hydrophobic ICL2 P 129 34x50 G.S3 L 194 G.S3.01
Hydrophobic TM3 I 126 3x54 G.H5 L 353 G.H5.25
Polar TM3 D 121 3x49 G.H5 C 351 G.H5.23
Hydrophobic TM3 D 121 3x49 G.H5 C 351 G.H5.23
Van-der-waals TM3 D 121 3x49 G.H5 C 351 G.H5.23
Polar ICL2 H 131 34x52 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 H 131 34x52 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 H 131 34x52 G.hns1 A 31 G.hns1.02