G13 - RXFP1 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 79.6

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.6
PAE mean: 17.1


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic ICL2 F 518 34x51 G.H5 I 366 G.H5.15
Van-der-waals ICL2 F 518 34x51 G.H5 I 366 G.H5.15
Hydrophobic TM5 S 605 5x64 G.H5 L 367 G.H5.16
Polar ICL2 R 522 34x55 G.H5 Q 373 G.H5.22
Hydrophobic ICL2 R 522 34x55 G.H5 Q 373 G.H5.22
Van-der-waals ICL2 R 522 34x55 G.H5 Q 373 G.H5.22
Hydrophobic ICL2 P 517 34x50 G.H5 K 363 G.H5.12
Van-der-waals ICL2 P 517 34x50 G.H5 K 363 G.H5.12
Hydrophobic ICL2 P 517 34x50 G.H5 L 367 G.H5.16
Hydrophobic ICL2 F 518 34x51 G.S3 F 218 G.S3.03
Hydrophobic TM5 S 609 5x68 G.H5 L 367 G.H5.16
Van-der-waals TM5 S 609 5x68 G.H5 L 367 G.H5.16
Polar TM6 K 622 6x29 G.h4s6 Q 339 G.h4s6.13
Hydrophobic TM6 Q 619 6x26 G.h4s6 P 341 G.h4s6.20
Hydrophobic TM5 V 606 5x65 G.H5 L 367 G.H5.16
Van-der-waals TM6 I 625 6x32 G.H5 Q 377 G.H5.26
Hydrophobic ICL2 V 521 34x54 G.HN T 43 G.HN.52
Van-der-waals ICL2 V 521 34x54 G.HN T 43 G.HN.52
Hydrophobic ICL2 F 518 34x51 G.S1 V 49 G.S1.02
Van-der-waals ICL2 F 518 34x51 G.S1 V 49 G.S1.02
Hydrophobic ICL2 F 518 34x51 G.H5 V 362 G.H5.11
Van-der-waals ICL2 F 518 34x51 G.H5 V 362 G.H5.11
Hydrophobic ICL2 F 518 34x51 G.H5 K 363 G.H5.12
Van-der-waals ICL2 F 518 34x51 G.H5 K 363 G.H5.12
Hydrophobic TM6 I 616 6x23 G.h4s6 K 340 G.h4s6.19
Polar ICL2 R 522 34x55 G.H5 N 370 G.H5.19
Aromatic ICL2 F 518 34x51 G.H5 F 359 G.H5.08
Hydrophobic ICL2 F 518 34x51 G.H5 F 359 G.H5.08
Van-der-waals ICL2 F 518 34x51 G.H5 F 359 G.H5.08
Hydrophobic TM6 F 630 6x37 G.H5 L 371 G.H5.20
Hydrophobic TM3 K 510 3x50 G.H5 L 374 G.H5.23
Hydrophobic ICL2 P 517 34x50 G.H5 I 366 G.H5.15
Van-der-waals ICL2 P 517 34x50 G.H5 I 366 G.H5.15
Hydrophobic TM3 I 514 3x54 G.H5 L 367 G.H5.16
Van-der-waals TM3 I 514 3x54 G.H5 L 367 G.H5.16
Hydrophobic TM6 L 626 6x33 G.H5 Q 377 G.H5.26
Polar H8 R 686 8x48 G.H5 L 376 G.H5.25
Van-der-waals H8 R 686 8x48 G.H5 L 376 G.H5.25
Hydrophobic TM6 L 626 6x33 G.H5 M 375 G.H5.24
Van-der-waals TM6 L 626 6x33 G.H5 M 375 G.H5.24
Polar TM2 Y 440 2x39 G.H5 L 374 G.H5.23
Hydrophobic TM2 Y 440 2x39 G.H5 L 374 G.H5.23
Hydrophobic ICL2 F 518 34x51 G.S3 V 216 G.S3.01
Van-der-waals ICL2 F 518 34x51 G.S3 V 216 G.S3.01
Hydrophobic TM3 I 514 3x54 G.H5 L 374 G.H5.23
Hydrophobic TM5 V 606 5x65 G.H5 L 371 G.H5.20
Polar TM5 T 612 5x71 G.H5 D 364 G.H5.13
Van-der-waals TM5 T 612 5x71 G.H5 D 364 G.H5.13
Polar TM3 C 513 3x53 G.H5 N 370 G.H5.19
Hydrophobic TM3 C 513 3x53 G.H5 N 370 G.H5.19
Van-der-waals TM3 C 513 3x53 G.H5 N 370 G.H5.19
Hydrophobic TM3 I 514 3x54 G.H5 L 371 G.H5.20
Van-der-waals TM3 I 514 3x54 G.H5 L 371 G.H5.20
Ionic ICL3 E 615 - G.S6 H 344 G.S6.03
Hydrophobic ICL3 E 615 - G.S6 H 344 G.S6.03
Hydrophobic TM5 T 612 5x71 G.H5 R 360 G.H5.09
Van-der-waals TM5 T 612 5x71 G.H5 R 360 G.H5.09
Polar TM6 K 622 6x29 G.h4s6 Q 338 G.h4s6.12
Hydrophobic TM5 A 613 5x72 G.S6 Y 343 G.S6.02
Hydrophobic TM6 L 626 6x33 G.H5 L 371 G.H5.20
Van-der-waals TM6 L 626 6x33 G.H5 L 371 G.H5.20
Polar TM5 S 609 5x68 G.H5 D 364 G.H5.13
Hydrophobic TM5 S 609 5x68 G.H5 D 364 G.H5.13
Van-der-waals TM5 S 609 5x68 G.H5 D 364 G.H5.13
Ionic ICL3 E 615 - G.H4 R 331 G.H4.16
Polar ICL3 E 615 - G.H4 R 331 G.H4.16
Hydrophobic ICL3 E 615 - G.H4 R 331 G.H4.16
Van-der-waals ICL3 E 615 - G.H4 R 331 G.H4.16
Hydrophobic H8 R 686 8x48 G.H5 Q 377 G.H5.26
Van-der-waals H8 R 686 8x48 G.H5 Q 377 G.H5.26
Hydrophobic H8 P 687 8x49 G.H5 L 376 G.H5.25
Van-der-waals H8 P 687 8x49 G.H5 L 376 G.H5.25
Hydrophobic TM3 C 513 3x53 G.H5 L 374 G.H5.23
Van-der-waals TM3 C 513 3x53 G.H5 L 374 G.H5.23
Hydrophobic TM6 I 616 6x23 G.h4s6 P 341 G.h4s6.20
Van-der-waals TM7 Y 681 7x53 G.H5 L 376 G.H5.25
Polar TM6 R 629 6x36 G.H5 M 375 G.H5.24
Hydrophobic TM6 R 629 6x36 G.H5 M 375 G.H5.24
Van-der-waals TM6 R 629 6x36 G.H5 M 375 G.H5.24
Hydrophobic TM6 F 630 6x37 G.H5 M 375 G.H5.24
Van-der-waals TM6 F 630 6x37 G.H5 M 375 G.H5.24
Hydrophobic ICL1 E 436 12x50 G.H5 L 376 G.H5.25
Van-der-waals ICL1 E 436 12x50 G.H5 L 376 G.H5.25
Polar TM6 K 622 6x29 G.H5 H 368 G.H5.17
Hydrophobic TM6 K 622 6x29 G.H5 H 368 G.H5.17
Hydrophobic H8 T 685 8x47 G.H5 L 376 G.H5.25
Van-der-waals H8 T 685 8x47 G.H5 L 376 G.H5.25
Hydrophobic TM2 Y 440 2x39 G.H5 L 376 G.H5.25
Polar ICL2 R 519 34x52 G.hns1 R 47 G.hns1.03
Hydrophobic ICL2 V 521 34x54 G.hns1 R 47 G.hns1.03
Van-der-waals ICL2 V 521 34x54 G.hns1 R 47 G.hns1.03