PDB
6XBK
Resolution
3.2 Å
Released
Sept. 30, 2020
Receptor
SMO
Class
F
Species
Homo sapiens
Ligand
Function
Cholesterol
Agonist
Reference
10.1038/S41589-020-0646-2

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Ligand Amino Acid Generic Number Segment Interaction Type
Cholesterol F222 N-term Van der Waals
Cholesterol W281 2.58x58 TM2 Van der Waals
Cholesterol L325 3.36x36 TM3 hydrophobic
Cholesterol D384 ECL2 Van der Waals
Cholesterol V386 ECL2 hydrophobic
Cholesterol S387 ECL2 Van der Waals
Cholesterol F391 45.51x51 ECL2 hydrophobic
Cholesterol Y394 ECL2 hydrophobic
Cholesterol R400 5.43x44 TM5 Van der Waals
Cholesterol V404 5.47x47 TM5 Van der Waals
Cholesterol I408 5.51x51 TM5 hydrophobic
Cholesterol T466 6.47x47 TM6 Van der Waals
Cholesterol H470 6.51x51 TM6 Van der Waals
Cholesterol D473 6.54x54 TM6 Van der Waals
Cholesterol E518 7.38x38 TM7 hydrophobic
Cholesterol N521 7.41x41 TM7 hydrophobic
Cholesterol L522 7.42x42 TM7 hydrophobic
Cholesterol A524 7.44x44 TM7 Van der Waals
Cholesterol M525 7.45x45 TM7 hydrophobic

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Snake plot — Download: PNG | SVG
ICL1 W R N S N ICL1ECL1 M D G A R R E I V C R A D G T M R L G E P T S N E T ECL1ICL2 L G T T Y Q P L S G ICL2ECL2 Q V D G D S V S G I C F V G Y K ECL2ICL3 P G L L ICL3ECL3 G L P T K Q P I P D C E I K N R P ECL3N-term M A A A R P A R G P E L P L L G L L L L L L L G D P G R G A A S S G N A T G P G P R S A G G S A R R S A A V T G P P P P L S H C G R A A P C E P L R Y N V C L G S V L P Y G A T S T L L A G D S D S Q E E A H G K L V L W S G L R N A P R C W A V I Q P L L C A V Y M P K C E N D R V E L P S R T L C Q A T R G P C A I V E R E R G W P D F L R C T P D R F P E G C T N E V Q N I K F N S S G Q C E V P L V R T D N P K S W Y E D V E G C G I Q C Q N P L F N-termC-term G Q S D D E P K R I K K S K M I A K A F S K R H E L L Q N P G Q E L S F S M H T V S H D G P V A G L A F D L N E P S A D V S S A W A Q H V T K M V A R R G A I L P Q D I S V T P V A T P V P P E E Q A N L W L V E A E I S P E L Q K R L G R K K K R R K R K K E V C P L A P P P E L H P P A P A P S T I P R L P Q L P R Q K C L V A A G A W G A G D S C R Q G A W T L V S N P F C P E P S P P Q D P F L P S A P A P V A W A H G R R Q G L G P I H S R T N L M D T E L M D A D S D F C-term T E A E H Q D M H S Y I A A F G A V T G L C T L F T L A T F V A D R Y P A V I L F Y V N A C F F V G S I G W L A Q F L S C V I I F V I V Y Y A L M A G V V W F V V L T Y A W H T S F K A K T S Y F H L L T W S L P F V L T V A I L A V A N Y R Y R A G F V L A P I G L V L I V G G Y F L I R G V M T L F S I K S N H S E K A A S K I N E T M L R L G I F G F L A F G F V L I T F S C H F Y D F F N Q A E W E R S F R D Y V L C Q A N V T I S L L V E K I N L F A M F G T G I A M S T W V W T K A W R R L T T L L I T W C R
Helix box plot — Download: PNG | SVG L T C L G T V A G F A A I Y S H M D Q H 1 F Y V N A C F F V G S I G W L A Q F 2 V V F W V V G A M L A Y Y V I V F I I V 3 T S Y F H L L T W S L P F V L T V A I L 4 L F Y G G V I L V L G I P A L V F G A R Y 5 G I F G F L A F G F V L I T F S C H F Y 6 T S M A I G T G F M A F L N I K E V L L 7

GPCRdb(A)
GPCRdb(F)
SMO
TM2
2x57 2.58x58 W281
TM3
3x36 3.36x36 L325
ECL2
45x51 45.51x51 F391
TM5
5x40 5.43x44 R400
5x43 5.47x47 V404
5x47 5.51x51 I408
TM6
6x51 6.47x47 T466
6x55 6.51x51 H470
6x58 6.54x54 D473
TM7
7x35 7.38x38 E518
7x38 7.41x41 N521
7x39 7.42x42 L522
7x41 7.44x44 A524
7x42 7.45x45 M525