Structure information

5-HT1A receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

7E2Y

SPECIES

Homo sapiens

RESOLUTION

3.000

PREFERRED CHAIN

R

REFERENCE

10.1038/S41586-021-03376-8

PUBLICATION DATE

April 14, 2021
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Ligand Interaction Browser

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LigandAmino AcidGeneric NumberSegmentInteraction Type
Ligand
Amino Acid
Generic Number
Segment
Interaction Type
Ligand
Amino Acid
Generic Number
Segment
Interaction Type
5-hydroxytryptamine D116 3.32x32 TM3 polar (charge-assisted hydrogen bond)
5-hydroxytryptamine V117 3.33x33 TM3 hydrophobic
5-hydroxytryptamine C120 3.36x36 TM3 polar (hydrogen bond)
5-hydroxytryptamine S199 5.42x43 TM5 Van der Waals
5-hydroxytryptamine F361 6.51x51 TM6 hydrophobic
5-hydroxytryptamine F361 6.51x51 TM6 Van der Waals
5-hydroxytryptamine F362 6.52x52 TM6 hydrophobic
5-hydroxytryptamine F362 6.52x52 TM6 Van der Waals
5-hydroxytryptamine Y390 7.43x42 TM7 Van der Waals
LigandAmino AcidGeneric NumberSegmentInteraction Type
Showing 1 to 9 of 9 entries

Ligands

5-hydroxytryptamine

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Residue Diagrams

A N G L V A C F I L T G L L L S T I V Q 1 G S L A V T D L M V S L V V L P M A A L Y 2 A C L H L I S S T C C L V D L A I F L D 3 A A A L I S L T W L I G F L I S I P P M 4 Y L V L M L L L P I Y F A G F T S Y I T Y 5 G I I M G T F I L C W L P F F I V A L V 6 V P N L L S N S Y G L W N I I A G L L 7
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ICL1 ECL1 ICL2 ECL2 ICL3 ECL3 N-term C-term T V S Y Q V I T S L L L G T L I F C A V L G N A C V V A A I A L E N V A N Y L I G S L A V T D L M V S V L V L P M A A L Y Q V L N G Q V T C D L F I A L D V L C C T S S I L H L C A I A L D R Y W A I T D T P R R A A A L I S L T W L I G F L I S I P P M L G W D H G Y T I Y S T F G A F Y I P L L L M L V L Y G R I F R A A R F R I R K T V K K V K N E R N A E A K R K M A L A R E R K T V K T L G I I M G T F I L C W L P F F I V A L V L P F C P T L L G A I I N W L G Y S N S L L N P V I Y A Y F N K D F K K F Q N A I I
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Residue Table


GPCRdb(A)
GPCRdb(A)
5-HT1A receptor
TM3
3x32 3.32x32 D116
3x33 3.33x33 V117
3x36 3.36x36 C120
TM5
5x43 5.42x43 S199
TM6
6x51 6.51x51 F361
6x52 6.52x52 F362
TM7
7x42 7.43x42 Y390